STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
DAMO_1538Homologs of previously reported genes of unknown function. (235 aa)    
Predicted Functional Partners:
DAMO_1539
Glycosyl transferase, family 2.
 
     0.870
DAMO_1540
Mannosyl-3-phosphoglycerate phosphatase.
 
     0.821
DAMO_1541
Conserved hypothetical protein; Homologs of previously reported genes of unknown function.
  
    0.776
DAMO_1542
Response regulator containing CheY-like receiver, AAA-type ATPase, and DNA-binding domains (fragment).
       0.697
DAMO_0988
Homologs of previously reported genes of unknown function.
   
    0.622
DAMO_1535
Putative ABC transporter permease protein; Function proposed based on presence of conserved amino acid motif, structural feature or limited homology; putative transporter.
       0.580
DAMO_1536
Putative ABC transporter (permease protein); Function proposed based on presence of conserved amino acid motif, structural feature or limited homology; putative transporter.
       0.580
DAMO_1537
Putative sugar ABC transporter, periplasmic sugar-binding protein; Function proposed based on presence of conserved amino acid motif, structural feature or limited homology.
       0.580
DAMO_1543
Hydroxypyruvate reductase.
       0.532
DAMO_1534
Putative sugar ABC transporter (ATP binding protein); Function proposed based on presence of conserved amino acid motif, structural feature or limited homology; putative transporter; Belongs to the ABC transporter superfamily.
       0.495
Your Current Organism:
Methylomirabilis oxyfera
NCBI taxonomy Id: 671143
Other names: C. Methylomirabilis oxyfera, Candidatus Methylomirabilis oxyfera
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