STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
lolDLipoprotein-releasing system (ABC transporter), ATP-binding protein lolD; Part of the ABC transporter complex LolCDE involved in the translocation of lipoproteins, in an ATP-dependent manner. Belongs to the ABC transporter superfamily. Lipoprotein translocase (TC 3.A.1.125) family. (226 aa)    
Predicted Functional Partners:
lolC
Lipoprotein releasing system, transmembrane protein, LolC/E family; Function of homologous gene experimentally demonstrated in an other organism; transporter.
  0.989
DAMO_3153
Homologs of previously reported genes of unknown function.
 
 0.975
DAMO_1956
Conserved hypothetical protein; Homologs of previously reported genes of unknown function.
   
  0.900
lysS
Lysyl-tRNA synthetase (Lysine--tRNA ligase) (LysRS); Belongs to the class-II aminoacyl-tRNA synthetase family.
 
     0.836
DAMO_0040
Homologs of previously reported genes of unknown function.
  
   0.609
clpB-2
Chaperone; Function of homologous gene experimentally demonstrated in an other organism; factor; Belongs to the ClpA/ClpB family.
  
  
 0.609
DAMO_1921
Homologs of previously reported genes of unknown function.
  
 
 0.604
DAMO_3055
Homologs of previously reported genes of unknown function.
  
   0.584
DAMO_0041
ABC-type transporter, permease component.
 
 
   0.535
DAMO_1919
Protein of unknown function; No homology to any previously reported sequences.
   
   0.524
Your Current Organism:
Methylomirabilis oxyfera
NCBI taxonomy Id: 671143
Other names: C. Methylomirabilis oxyfera, Candidatus Methylomirabilis oxyfera
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.