STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
DAMO_1706HEPN domain protein. (141 aa)    
Predicted Functional Partners:
DAMO_1705
DNA polymerase, beta-like region.
 
     0.946
DAMO_1120
DNA polymerase, beta domain protein region (fragment).
  
     0.774
DAMO_0954
Homologs of previously reported genes of unknown function.
  
     0.749
DAMO_1707
Protein of unknown function; No homology to any previously reported sequences.
       0.508
DAMO_1708
Homologs of previously reported genes of unknown function.
       0.508
DAMO_0399
Homologs of previously reported genes of unknown function.
  
     0.500
DAMO_1703
Homologs of previously reported genes of unknown function.
       0.500
vapC-4
PilT-like protein; Toxic component of a toxin-antitoxin (TA) system. An RNase. Belongs to the PINc/VapC protein family.
       0.500
Your Current Organism:
Methylomirabilis oxyfera
NCBI taxonomy Id: 671143
Other names: C. Methylomirabilis oxyfera, Candidatus Methylomirabilis oxyfera
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.