STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
csrACarbon storage regulator homolog (modular protein); A translational regulator that binds mRNA to regulate translation initiation and/or mRNA stability. Usually binds in the 5'- UTR at or near the Shine-Dalgarno sequence preventing ribosome-binding, thus repressing translation. Its main target seems to be the major flagellin gene, while its function is anatagonized by FliW. (83 aa)    
Predicted Functional Partners:
fliW
Putative Flagellar assembly factor fliW; Acts as an anti-CsrA protein, binds CsrA and prevents it from repressing translation of its target genes, one of which is flagellin. Binds to flagellin and participates in the assembly of the flagellum.
 
 
 0.999
DAMO_1802
Putative Flagellar hook-associated protein 3; Flagellin is the subunit protein which polymerizes to form the filaments of bacterial flagella.
 
  
 0.854
flgK
Putative Flagellar hook-associated protein 1 (HAP1); Function proposed based on presence of conserved amino acid motif, structural feature or limited homology.
 
  
 0.772
DAMO_1741
Flagellar motor switch protein FliN; Function proposed based on presence of conserved amino acid motif, structural feature or limited homology.
 
   0.714
fliF
Flagellar basal body M-ring protein; The M ring may be actively involved in energy transduction. Belongs to the FliF family.
  
  
 0.642
DAMO_1806
Putative FlgM family protein; Function proposed based on presence of conserved amino acid motif, structural feature or limited homology.
  
  
 0.627
DAMO_1818
MotA/TolQ/ExbB proton channel precursor.
 
    0.615
fliG
Flagellar motor switch protein fliG; Function of homologous gene experimentally demonstrated in an other organism; structure.
 
    0.611
DAMO_1742
Putative Flagellar motor switch protein fliM; Function proposed based on presence of conserved amino acid motif, structural feature or limited homology.
 
  
 0.609
DAMO_1777
Putative flagellin; Flagellin is the subunit protein which polymerizes to form the filaments of bacterial flagella.
 
  
 0.559
Your Current Organism:
Methylomirabilis oxyfera
NCBI taxonomy Id: 671143
Other names: C. Methylomirabilis oxyfera, Candidatus Methylomirabilis oxyfera
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