Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
DAMO_1908Membrane protein of unknown function; No homology to any previously reported sequences. (398 aa)    
Predicted Functional Partners:
DAMO_1907
Copper resistance protein CopC precursor.
 
  
 0.946
DAMO_1906
Homologs of previously reported genes of unknown function.
       0.787
DAMO_1909
Exported protein of unknown function; No homology to any previously reported sequences.
       0.741
actP
Copper-transporting P-type ATPase; Function of homologous gene experimentally demonstrated in an other organism; transporter.
     
 0.485
DAMO_1910
Homologs of previously reported genes of unknown function.
       0.437
DAMO_1905
Exported protein of unknown function; No homology to any previously reported sequences.
       0.410
Your Current Organism:
Methylomirabilis oxyfera
NCBI taxonomy Id: 671143
Other names: C. Methylomirabilis oxyfera, Candidatus Methylomirabilis oxyfera
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