Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
troASimilar to periplasmic zinc binding protein. (353 aa)    
Predicted Functional Partners:
DAMO_1983
Membrane protein of unknown function; No homology to any previously reported sequences.
 
  
 0.985
DAMO_1980
Homologs of previously reported genes of unknown function.
 
     0.937
rpsZ
30S ribosomal protein S14 type Z; Binds 16S rRNA, required for the assembly of 30S particles and may also be responsible for determining the conformation of the 16S rRNA at the A site.
  
  
 0.708
DAMO_1982
ABC transporter, ATPase subunit.
 
   
 0.698
DAMO_1979
Protein of unknown function; No homology to any previously reported sequences.
       0.460
actP
Copper-transporting P-type ATPase; Function of homologous gene experimentally demonstrated in an other organism; transporter.
     
 0.430
DAMO_1984
Membrane protein of unknown function; No homology to any previously reported sequences.
       0.424
Your Current Organism:
Methylomirabilis oxyfera
NCBI taxonomy Id: 671143
Other names: C. Methylomirabilis oxyfera, Candidatus Methylomirabilis oxyfera
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