STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
DAMO_1987Homologs of previously reported genes of unknown function. (160 aa)    
Predicted Functional Partners:
DAMO_1016
Rhodanese-related sulfurtransferase-like protein precursor.
  
 
 0.902
DAMO_1665
Homologs of previously reported genes of unknown function.
     
  0.900
DAMO_1986
Protein of unknown function; No homology to any previously reported sequences.
       0.693
DAMO_1985
Thioredoxin peroxidase (AhpC, Alkyl hydroperoxide reductase); Thiol-specific peroxidase that catalyzes the reduction of hydrogen peroxide and organic hydroperoxides to water and alcohols, respectively. Plays a role in cell protection against oxidative stress by detoxifying peroxides.
  
    0.632
DAMO_1988
Serine/threonine protein kinase (fragment).
       0.535
focA
Putative formate transporter 1 (Formate channel 1); Function proposed based on presence of conserved amino acid motif, structural feature or limited homology.
  
    0.426
Your Current Organism:
Methylomirabilis oxyfera
NCBI taxonomy Id: 671143
Other names: C. Methylomirabilis oxyfera, Candidatus Methylomirabilis oxyfera
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