STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
DAMO_1994Putative succinate dehydrogenase membrane anchor subunit (sdhD); Function proposed based on presence of conserved amino acid motif, structural feature or limited homology; putative enzyme. (247 aa)    
Predicted Functional Partners:
DAMO_1992
Succinate dehydrogenase subunit B.
 
 
 
 0.983
sdhA
Succinate dehydrogenase flavoprotein subunit; Function of homologous gene experimentally demonstrated in an other organism; enzyme.
 
 
   0.972
DAMO_1995
Exported protein of unknown function; No homology to any previously reported sequences.
       0.642
mdh
Malate dehydrogenase; Catalyzes the reversible oxidation of malate to oxaloacetate. Belongs to the LDH/MDH superfamily. MDH type 3 family.
       0.530
DAMO_1513
Protein of unknown function; No homology to any previously reported sequences.
  
     0.492
icd
Isocitrate dehydrogenase [NADP] (IDH) (Oxalosuccinate decarboxylase) (NADP(+)-specific ICDH) (IDP).
       0.464
DAMO_0690
Homologs of previously reported genes of unknown function.
  
     0.403
DAMO_0702
Putative Chalcone and stilbene synthase domain protein; Function proposed based on presence of conserved amino acid motif, structural feature or limited homology.
  
     0.400
Your Current Organism:
Methylomirabilis oxyfera
NCBI taxonomy Id: 671143
Other names: C. Methylomirabilis oxyfera, Candidatus Methylomirabilis oxyfera
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