STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
DAMO_2000Conserved hypothetical protein; Homologs of previously reported genes of unknown function. (170 aa)    
Predicted Functional Partners:
rarA
Putative polynucleotide enzyme with nucleotide triphosphate hydrolase domain; Function proposed based on presence of conserved amino acid motif, structural feature or limited homology; putative enzyme.
      0.911
cmk
Cytidylate kinase (CK) (Cytidine monophosphate kinase) (CMP kinase); Function of homologous gene experimentally demonstrated in an other organism; enzyme.
 
      0.666
DAMO_2001
Putative glycine betaine/carnitine/choline ABC transporter (permease and substrate binding protein); Function proposed based on presence of conserved amino acid motif, structural feature or limited homology; putative transporter.
     
 0.601
DAMO_1998
Protein of unknown function; No homology to any previously reported sequences.
       0.558
DAMO_1999
Protein of unknown function; No homology to any previously reported sequences.
       0.558
DAMO_2002
Putative Glycine betaine/carnitine/choline ABC transporter (ATP-binding protein); Function proposed based on presence of conserved amino acid motif, structural feature or limited homology; putative transporter.
       0.547
DAMO_2003
Conserved hypothetical protein; Homologs of previously reported genes of unknown function.
       0.434
Your Current Organism:
Methylomirabilis oxyfera
NCBI taxonomy Id: 671143
Other names: C. Methylomirabilis oxyfera, Candidatus Methylomirabilis oxyfera
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.