STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
cynTCarbonic anhydrase. (209 aa)    
Predicted Functional Partners:
DAMO_1021
Homologs of previously reported genes of unknown function.
     
  0.900
focA
Putative formate transporter 1 (Formate channel 1); Function proposed based on presence of conserved amino acid motif, structural feature or limited homology.
  
    0.824
cbbS
Ribulose bisphosphate carboxylase small chain (RuBisCO small subunit); Function of homologous gene experimentally demonstrated in an other organism; enzyme.
   
 
 0.822
DAMO_2167
Putative CbbX-like protein, containing AAA-ATPase domain; Function proposed based on presence of conserved amino acid motif, structural feature or limited homology; putative regulator.
       0.651
ppcA
Phosphoenolpyruvate carboxylase (PEPCase) (PEPC).
       0.651
apt
Adenine phosphoribosyltransferase; Catalyzes a salvage reaction resulting in the formation of AMP, that is energically less costly than de novo synthesis.
   
    0.579
DAMO_2171
Protein of unknown function; No homology to any previously reported sequences.
       0.508
cbbL
Ribulose bisphosphate carboxylase large chain (RuBisCO large subunit); Function of homologous gene experimentally demonstrated in an other organism; enzyme; Belongs to the RuBisCO large chain family.
   
 
 0.497
napA
Periplasmic nitrate reductase, large subunit; Catalytic subunit of the nitrate reductase complex NapAB. Receives electrons from NapB and catalyzes the reduction of nitrate to nitrite.
 
    0.439
Your Current Organism:
Methylomirabilis oxyfera
NCBI taxonomy Id: 671143
Other names: C. Methylomirabilis oxyfera, Candidatus Methylomirabilis oxyfera
Server load: low (20%) [HD]
STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.