STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
DAMO_2265TrkA-N:TrkA-C precursor (fragment). (184 aa)    
Predicted Functional Partners:
DAMO_2264
TrkA-N domain protein (fragment).
   
 0.994
DAMO_2263
Membrane protein-like precursor (fragment).
       0.773
DAMO_2261
Homologs of previously reported genes of unknown function.
  
    0.716
DAMO_2262
Putative Phosphoesterase, PA-phosphatase related (membrane associated) (fragment); Function proposed based on presence of conserved amino acid motif, structural feature or limited homology.
       0.714
DAMO_2266
Intracellular protease, PfpI family.
       0.675
DAMO_2260
Polyprenyl synthetase; Belongs to the FPP/GGPP synthase family.
       0.628
DAMO_2267
Putative transcriptional regulator; Function proposed based on presence of conserved amino acid motif, structural feature or limited homology.
       0.594
DAMO_2268
Homologs of previously reported genes of unknown function.
       0.594
lepA
GTP-binding elongation factor; Required for accurate and efficient protein synthesis under certain stress conditions. May act as a fidelity factor of the translation reaction, by catalyzing a one-codon backward translocation of tRNAs on improperly translocated ribosomes. Back-translocation proceeds from a post-translocation (POST) complex to a pre- translocation (PRE) complex, thus giving elongation factor G a second chance to translocate the tRNAs correctly. Binds to ribosomes in a GTP- dependent manner.
     
 0.429
DAMO_2257
Putative oxygen-independent coproporphyrinogen III oxidase (yggW); Probably acts as a heme chaperone, transferring heme to an unknown acceptor. Binds one molecule of heme per monomer, possibly covalently. Binds 1 [4Fe-4S] cluster. The cluster is coordinated with 3 cysteines and an exchangeable S-adenosyl-L-methionine. Belongs to the anaerobic coproporphyrinogen-III oxidase family.
       0.419
Your Current Organism:
Methylomirabilis oxyfera
NCBI taxonomy Id: 671143
Other names: C. Methylomirabilis oxyfera, Candidatus Methylomirabilis oxyfera
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