STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
pilCType 4 fimbrial assembly protein pilC. (404 aa)    
Predicted Functional Partners:
tapB
Type IV pilus assembly protein tapB.
 
 0.985
DAMO_2489
Putative General secretion pathway protein E (Type II traffic warden ATPase); Function proposed based on presence of conserved amino acid motif, structural feature or limited homology; putative transporter.
 
 0.972
yggR
Transporter; Function of homologous gene experimentally demonstrated in an other organism; transporter.
  
 0.949
DAMO_3001
Type 4 prepilin-like proteins leader peptide processing enzyme; Cleaves type-4 fimbrial leader sequence and methylates the N- terminal (generally Phe) residue.
 
  
 0.875
DAMO_1412
Type IV pilus assembly protein PilM.
 
 
 
 0.818
pilT
Twitching mobility protein.
  
 0.806
DAMO_1408
Protein of unknown function; No homology to any previously reported sequences.
 
 
 
 0.806
DAMO_0319
Putative Metallo-beta-lactamase superfamily; Function proposed based on presence of conserved amino acid motif, structural feature or limited homology.
  
  
 0.768
gspG
Pseudopilin, cryptic, general secretion pathway; Function of strongly homologous gene; transporter.
 
  
 0.703
DAMO_3007
Putative Fimbrial protein pilin; Function proposed based on presence of conserved amino acid motif, structural feature or limited homology.
 
   
 0.654
Your Current Organism:
Methylomirabilis oxyfera
NCBI taxonomy Id: 671143
Other names: C. Methylomirabilis oxyfera, Candidatus Methylomirabilis oxyfera
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