STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
DAMO_3146Homologs of previously reported genes of unknown function. (66 aa)    
Predicted Functional Partners:
DAMO_3110
Homologs of previously reported genes of unknown function.
 
     0.802
DAMO_3145
Protein of unknown function; No homology to any previously reported sequences.
       0.727
DAMO_1492
Homologs of previously reported genes of unknown function.
  
     0.615
DAMO_0439
Homologs of previously reported genes of unknown function.
  
     0.600
FCA
Cytosine deaminase (Cytosine aminohydrolase).
       0.598
DAMO_3143
Protein of unknown function; No homology to any previously reported sequences.
       0.534
DAMO_0062
Homologs of previously reported genes of unknown function.
  
     0.458
DAMO_2196
Homologs of previously reported genes of unknown function.
  
     0.457
DAMO_0367
Homologs of previously reported genes of unknown function.
  
     0.452
DAMO_0440
Homologs of previously reported genes of unknown function.
  
     0.440
Your Current Organism:
Methylomirabilis oxyfera
NCBI taxonomy Id: 671143
Other names: C. Methylomirabilis oxyfera, Candidatus Methylomirabilis oxyfera
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.