STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
DAMO_3155Efflux transporter, RND family, MFP subunit precursor; Belongs to the membrane fusion protein (MFP) (TC 8.A.1) family. (479 aa)    
Predicted Functional Partners:
DAMO_3153
Homologs of previously reported genes of unknown function.
  
 0.977
ybbA
Putative transporter subunit: ATP-binding component of ABC superfamily; Non-canonical ABC transporter that contains transmembrane domains (TMD), which form a pore in the membrane, and an ATP-binding domain (NBD), which is responsible for energy generation. Confers resistance against macrolides.
 
 0.961
DAMO_3156
Homologs of previously reported genes of unknown function.
 
 
 0.892
DAMO_3071
ABC transporter, transmembrane region:ABC transporter precursor.
  
 
 0.694
DAMO_2218
Putative Outer membrane efflux protein; Function proposed based on presence of conserved amino acid motif, structural feature or limited homology.
 
 
 0.615
DAMO_1931
Putative Outer membrane efflux protein precursor; Function proposed based on presence of conserved amino acid motif, structural feature or limited homology.
 
 
 0.591
DAMO_3152
Homologs of previously reported genes of unknown function.
       0.559
DAMO_3157
Exported protein of unknown function; No homology to any previously reported sequences.
       0.538
DAMO_3158
Protein of unknown function; No homology to any previously reported sequences.
       0.538
DAMO_3159
Putative RNA polymerase sigma-H factor (Sigma-30); Function proposed based on presence of conserved amino acid motif, structural feature or limited homology; Belongs to the sigma-70 factor family. ECF subfamily.
       0.538
Your Current Organism:
Methylomirabilis oxyfera
NCBI taxonomy Id: 671143
Other names: C. Methylomirabilis oxyfera, Candidatus Methylomirabilis oxyfera
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.