STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
DAMO_3172FAD linked oxidase-like protein. (453 aa)    
Predicted Functional Partners:
DAMO_3031
Homologs of previously reported genes of unknown function.
 
 0.985
glcD
Glycolate oxidase, subunit GlcD; Function of homologous gene experimentally demonstrated in an other organism; enzyme.
 
  
 
0.979
hemL-2
Glutamate-1-semialdehyde 2,1-aminomutase (GSA) (Glutamate-1-semialdehyde aminotransferase) (GSA-AT); Belongs to the class-III pyridoxal-phosphate-dependent aminotransferase family.
       0.773
DAMO_0854
NADP-reducing hydrogenase subunit HndC; Function proposed based on presence of conserved amino acid motif, structural feature or limited homology; putative enzyme.
   
   0.632
fixB
Protein FixB; Function of strongly homologous gene; carrier.
 
 
 0.622
fixA
Protein fixA; Function of strongly homologous gene; carrier.
 
 
 0.619
DAMO_3174
Protein of unknown function; No homology to any previously reported sequences.
       0.562
DAMO_0898
4-hydroxybenzoate polyprenyltransferase-related protein; Belongs to the UbiA prenyltransferase family.
    
 0.561
gltB
Glutamate synthase [NADPH] large chain (NADPH-GOGAT); Function of strongly homologous gene; enzyme.
     
 0.477
atpD
ATP synthase subunit beta, membrane-bound, F1 sector; Produces ATP from ADP in the presence of a proton gradient across the membrane. The catalytic sites are hosted primarily by the beta subunits.
     
 0.455
Your Current Organism:
Methylomirabilis oxyfera
NCBI taxonomy Id: 671143
Other names: C. Methylomirabilis oxyfera, Candidatus Methylomirabilis oxyfera
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.