R0JTU3_SETT2 protein (Exserohilum turcica) - STRING interaction network

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Known Interactions

from curated databases

experimentally determined

Predicted Interactions

gene neighborhood

gene fusions

gene co-occurrence

Others

textmining

co-expression

protein homology

Your Input:

Neighborhood

Gene Fusion

Cooccurrence

Coexpression

Experiments

Databases

Textmining

[Homology]

Score

R0JTU3_SETT2

Uncharacterized protein. (808 aa)

Predicted Functional Partners:

R0KT89_SETT2

0.994

R0K879_SETT2

0.982

R0KFZ8_SETT2

0.971

R0I6Z1_SETT2

0.969

R0IUW0_SETT2

0.955

R0JIL9_SETT2

0.933

R0K6Q2_SETT2

0.872

R0JNR6_SETT2

0.835

R0KDP8_SETT2

0.811

R0KMB3_SETT2

0.774

Your Current Organism:

Exserohilum turcica

NCBI taxonomy Id: 671987
Other names: E. turcica Et28A, Exserohilum turcica Et28A, Setosphaeria turcica Et28A

Send network to Cytoscape

Export your current network:

... as a bitmap image:

download

file format is 'PNG': portable network graphic

... as a high-resolution bitmap:

download

same PNG format, but at higher resolution

... as a vector graphic:

download

SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc

... as short tabular text output:

download

TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)

... as tabular text output:

download

TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)

... as an XML summary:

download

structured XML interaction data, according to the 'PSI-MI' data standard

... protein node degrees:

download

node degree of proteins in your network (given the current score cut-off)

... network coordinates:

download

a flat-file format describing the coordinates and colors of nodes in the network

... protein sequences:

download

MFA: multi-fasta format - containing the aminoacid sequences in the network

... protein annotations:

download

a tab-delimited file describing the names, domains and descriptions of proteins in your network

... functional annotations:

download

a tab-delimited file containing all known functional terms of protiens in your network

Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
R0I6Z1_SETT2	R0IUW0_SETT2	R0I6Z1	R0IUW0	Uncharacterized protein.	Uncharacterized protein.	0.933
R0I6Z1_SETT2	R0JIL9_SETT2	R0I6Z1	R0JIL9	Uncharacterized protein.	Uncharacterized protein.	0.900
R0I6Z1_SETT2	R0JTU3_SETT2	R0I6Z1	R0JTU3	Uncharacterized protein.	Uncharacterized protein.	0.969
R0I6Z1_SETT2	R0K6Q2_SETT2	R0I6Z1	R0K6Q2	Uncharacterized protein.	Uncharacterized protein.	0.900
R0I6Z1_SETT2	R0K879_SETT2	R0I6Z1	R0K879	Uncharacterized protein.	Elongator complex protein 3; Catalytic tRNA acetyltransferase subunit of the RNA polymerase II elongator complex, which is a component of the RNA polymerase II (Pol II) holoenzyme and is involved in transcriptional elongation.	0.953
R0I6Z1_SETT2	R0KDP8_SETT2	R0I6Z1	R0KDP8	Uncharacterized protein.	Uncharacterized protein.	0.569
R0I6Z1_SETT2	R0KFZ8_SETT2	R0I6Z1	R0KFZ8	Uncharacterized protein.	Uncharacterized protein.	0.970
R0I6Z1_SETT2	R0KT89_SETT2	R0I6Z1	R0KT89	Uncharacterized protein.	Elongator complex protein 1; Component of the RNA polymerase II elongator complex, a multiprotein complex associated with the RNA polymerase II (Pol II) holoenzyme, and which is involved in transcriptional elongation. Belongs to the ELP1/IKA1 family.	0.969
R0IUW0_SETT2	R0I6Z1_SETT2	R0IUW0	R0I6Z1	Uncharacterized protein.	Uncharacterized protein.	0.933
R0IUW0_SETT2	R0JTU3_SETT2	R0IUW0	R0JTU3	Uncharacterized protein.	Uncharacterized protein.	0.955
R0IUW0_SETT2	R0K879_SETT2	R0IUW0	R0K879	Uncharacterized protein.	Elongator complex protein 3; Catalytic tRNA acetyltransferase subunit of the RNA polymerase II elongator complex, which is a component of the RNA polymerase II (Pol II) holoenzyme and is involved in transcriptional elongation.	0.936
R0IUW0_SETT2	R0KFZ8_SETT2	R0IUW0	R0KFZ8	Uncharacterized protein.	Uncharacterized protein.	0.976
R0IUW0_SETT2	R0KT89_SETT2	R0IUW0	R0KT89	Uncharacterized protein.	Elongator complex protein 1; Component of the RNA polymerase II elongator complex, a multiprotein complex associated with the RNA polymerase II (Pol II) holoenzyme, and which is involved in transcriptional elongation. Belongs to the ELP1/IKA1 family.	0.958
R0JIL9_SETT2	R0I6Z1_SETT2	R0JIL9	R0I6Z1	Uncharacterized protein.	Uncharacterized protein.	0.900
R0JIL9_SETT2	R0JTU3_SETT2	R0JIL9	R0JTU3	Uncharacterized protein.	Uncharacterized protein.	0.933
R0JIL9_SETT2	R0K879_SETT2	R0JIL9	R0K879	Uncharacterized protein.	Elongator complex protein 3; Catalytic tRNA acetyltransferase subunit of the RNA polymerase II elongator complex, which is a component of the RNA polymerase II (Pol II) holoenzyme and is involved in transcriptional elongation.	0.936
R0JIL9_SETT2	R0KFZ8_SETT2	R0JIL9	R0KFZ8	Uncharacterized protein.	Uncharacterized protein.	0.964
R0JIL9_SETT2	R0KT89_SETT2	R0JIL9	R0KT89	Uncharacterized protein.	Elongator complex protein 1; Component of the RNA polymerase II elongator complex, a multiprotein complex associated with the RNA polymerase II (Pol II) holoenzyme, and which is involved in transcriptional elongation. Belongs to the ELP1/IKA1 family.	0.937
R0JNR6_SETT2	R0JTU3_SETT2	R0JNR6	R0JTU3	Uncharacterized protein.	Uncharacterized protein.	0.835
R0JNR6_SETT2	R0K879_SETT2	R0JNR6	R0K879	Uncharacterized protein.	Elongator complex protein 3; Catalytic tRNA acetyltransferase subunit of the RNA polymerase II elongator complex, which is a component of the RNA polymerase II (Pol II) holoenzyme and is involved in transcriptional elongation.	0.714