Export your current network:
... as a bitmap image:
file format is 'PNG': portable network graphic
... as a high-resolution bitmap:
same PNG format, but at higher resolution
... as a vector graphic:
SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc
... as short tabular text output:
TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)
... as tabular text output:
TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)
... as an XML summary:
structured XML interaction data, according to the 'PSI-MI' data standard
... protein node degrees:
node degree of proteins in your network (given the current score cut-off)
... network coordinates:
a flat-file format describing the coordinates and colors of nodes in the network
... protein sequences:
MFA: multi-fasta format - containing the aminoacid sequences in the network
... protein annotations:
a tab-delimited file describing the names, domains and descriptions of proteins in your network
... functional annotations:
a tab-delimited file containing all known functional terms of protiens in your network
Browse interactions in tabular form:
node1 | node2 | node1 accession | node2 accession | node1 annotation | node2 annotation | score |
AIL70844.1 | AIL70845.1 | VV93_v1c17580 | VV93_v1c17590 | Membrane protein. | ATP-dependent RNA helicase HrpA. | 0.564 |
AIL70844.1 | AIL71345.1 | VV93_v1c17580 | VV93_v1c22670 | Membrane protein. | Outer membrane protein; Molecular chaperone that interacts specifically with outer membrane proteins, thus maintaining the solubility of early folding intermediates during passage through the periplasm. | 0.532 |
AIL70844.1 | AIL72927.1 | VV93_v1c17580 | VV93_v1c38710 | Membrane protein. | Hypothetical protein. | 0.498 |
AIL70844.1 | AIL73340.1 | VV93_v1c17580 | VV93_v1c42890 | Membrane protein. | Oligogalacturonate lyase. | 0.498 |
AIL70844.1 | rplM | VV93_v1c17580 | VV93_v1c05350 | Membrane protein. | 50S ribosomal protein L13; This protein is one of the early assembly proteins of the 50S ribosomal subunit, although it is not seen to bind rRNA by itself. It is important during the early stages of 50S assembly. | 0.488 |
AIL70844.1 | rpsB | VV93_v1c17580 | VV93_v1c22760 | Membrane protein. | 30S ribosomal protein S2; Belongs to the universal ribosomal protein uS2 family. | 0.489 |
AIL70844.1 | rpsF | VV93_v1c17580 | VV93_v1c27130 | Membrane protein. | 30S ribosomal protein S6; Binds together with S18 to 16S ribosomal RNA. | 0.530 |
AIL70844.1 | rpsL | VV93_v1c17580 | VV93_v1c27600 | Membrane protein. | 30S ribosomal protein S12; With S4 and S5 plays an important role in translational accuracy. | 0.489 |
AIL70844.1 | rpsN | VV93_v1c17580 | VV93_v1c03590 | Membrane protein. | 30S ribosomal protein S14; Binds 16S rRNA, required for the assembly of 30S particles and may also be responsible for determining the conformation of the 16S rRNA at the A site; Belongs to the universal ribosomal protein uS14 family. | 0.490 |
AIL70844.1 | tolB | VV93_v1c17580 | VV93_v1c19850 | Membrane protein. | Translocation protein TolB; Part of the Tol-Pal system, which plays a role in outer membrane invagination during cell division and is important for maintaining outer membrane integrity. | 0.681 |
AIL70845.1 | AIL70844.1 | VV93_v1c17590 | VV93_v1c17580 | ATP-dependent RNA helicase HrpA. | Membrane protein. | 0.564 |
AIL70845.1 | rpsL | VV93_v1c17590 | VV93_v1c27600 | ATP-dependent RNA helicase HrpA. | 30S ribosomal protein S12; With S4 and S5 plays an important role in translational accuracy. | 0.576 |
AIL71345.1 | AIL70844.1 | VV93_v1c22670 | VV93_v1c17580 | Outer membrane protein; Molecular chaperone that interacts specifically with outer membrane proteins, thus maintaining the solubility of early folding intermediates during passage through the periplasm. | Membrane protein. | 0.532 |
AIL71345.1 | rplM | VV93_v1c22670 | VV93_v1c05350 | Outer membrane protein; Molecular chaperone that interacts specifically with outer membrane proteins, thus maintaining the solubility of early folding intermediates during passage through the periplasm. | 50S ribosomal protein L13; This protein is one of the early assembly proteins of the 50S ribosomal subunit, although it is not seen to bind rRNA by itself. It is important during the early stages of 50S assembly. | 0.478 |
AIL71345.1 | rpsB | VV93_v1c22670 | VV93_v1c22760 | Outer membrane protein; Molecular chaperone that interacts specifically with outer membrane proteins, thus maintaining the solubility of early folding intermediates during passage through the periplasm. | 30S ribosomal protein S2; Belongs to the universal ribosomal protein uS2 family. | 0.517 |
AIL71345.1 | rpsF | VV93_v1c22670 | VV93_v1c27130 | Outer membrane protein; Molecular chaperone that interacts specifically with outer membrane proteins, thus maintaining the solubility of early folding intermediates during passage through the periplasm. | 30S ribosomal protein S6; Binds together with S18 to 16S ribosomal RNA. | 0.522 |
AIL71345.1 | rpsL | VV93_v1c22670 | VV93_v1c27600 | Outer membrane protein; Molecular chaperone that interacts specifically with outer membrane proteins, thus maintaining the solubility of early folding intermediates during passage through the periplasm. | 30S ribosomal protein S12; With S4 and S5 plays an important role in translational accuracy. | 0.473 |
AIL72927.1 | AIL70844.1 | VV93_v1c38710 | VV93_v1c17580 | Hypothetical protein. | Membrane protein. | 0.498 |
AIL73340.1 | AIL70844.1 | VV93_v1c42890 | VV93_v1c17580 | Oligogalacturonate lyase. | Membrane protein. | 0.498 |
rplM | AIL70844.1 | VV93_v1c05350 | VV93_v1c17580 | 50S ribosomal protein L13; This protein is one of the early assembly proteins of the 50S ribosomal subunit, although it is not seen to bind rRNA by itself. It is important during the early stages of 50S assembly. | Membrane protein. | 0.488 |
page 1 of 3