Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
AIL70979.1Hypothetical protein. (66 aa)    
Predicted Functional Partners:
AIL70980.1
Membrane protein.
       0.772
AIL71371.1
Hypothetical protein.
  
     0.680
AIL73123.1
Outer membrane protein.
  
     0.680
AIL69305.1
Type II secretion pathway protein N.
  
     0.676
AIL72023.1
Hypothetical protein.
  
     0.652
AIL70983.1
Hypothetical protein.
       0.628
AIL72821.1
Oxidoreductase.
  
     0.610
AIL71900.1
Hypothetical protein.
  
     0.597
AIL69185.1
Membrane protein.
  
     0.583
AIL69299.1
Type II secretory pathway, pseudopilin EpsH.
  
     0.571
Your Current Organism:
Vibrio vulnificus
NCBI taxonomy Id: 672
Other names: ATCC 27562, BCRC 12905, Beneckea vulnifica, CAIM 610, CCRC 12905, CCRC:12905, CCUG 13448, CCUG 16394, CIP 75.4, CIP:75.04, DSM 10143, IFO 15645, JCM 3725, LMG 13545, LMG:13545, NBRC 15645, NCIMB 2046, NCTC 13647, V. vulnificus, strain 324
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