Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
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[Homology]
Score
AIL71068.1Cyd operon protein YbgE. (100 aa)    
Predicted Functional Partners:
AIL71070.1
Cytochrome d ubiquinol oxidase, subunit II.
  
    0.851
AIL71071.1
Cytochrome d ubiquinol oxidase, subunit I.
  
    0.844
AIL69290.1
AsmA family protein.
  
     0.772
AIL69198.1
Membrane protein.
  
     0.771
uspB
Universal stress protein UspB.
  
     0.762
AIL71119.1
Primosomal replication protein N''.
  
     0.760
bamC
Lipoprotein; Part of the outer membrane protein assembly complex, which is involved in assembly and insertion of beta-barrel proteins into the outer membrane.
  
     0.752
AIL71474.1
Smp protein.
  
     0.751
AIL69474.1
Lysine transporter LysM.
  
     0.750
AIL71067.1
4-hydroxybenzoyl-CoA thioesterase.
     
 0.749
Your Current Organism:
Vibrio vulnificus
NCBI taxonomy Id: 672
Other names: ATCC 27562, BCRC 12905, Beneckea vulnifica, CAIM 610, CCRC 12905, CCRC:12905, CCUG 13448, CCUG 16394, CIP 75.4, CIP:75.04, DSM 10143, IFO 15645, JCM 3725, LMG 13545, LMG:13545, NBRC 15645, NCIMB 2046, NCTC 13647, V. vulnificus, strain 324
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