Export your current network:
... as a vector graphic:
SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc
... as short tabular text output:
TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)
... as tabular text output:
TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)
... as an XML summary:
structured XML interaction data, according to the 'PSI-MI' data standard
... protein node degrees:
node degree of proteins in your network (given the current score cut-off)
... network coordinates:
a flat-file format describing the coordinates and colors of nodes in the network
... protein sequences:
MFA: multi-fasta format - containing the aminoacid sequences in the network
... protein annotations:
a tab-delimited file describing the names, domains and descriptions of proteins in your network
... functional annotations:
a tab-delimited file containing all known functional terms of protiens in your network
Browse interactions in tabular form:
| node1 | node2 | node1 accession | node2 accession | node1 annotation | node2 annotation | score |
| AIL69466.1 | AIL71937.1 | VV93_v1c03670 | VV93_v1c28650 | 50S ribosomal protein L36. | Nucleoid DNA-binding protein; Histone-like DNA-binding protein which is capable of wrapping DNA to stabilize it, and thus to prevent its denaturation under extreme environmental conditions. | 0.767 |
| AIL69466.1 | fliG | VV93_v1c03670 | VV93_v1c21830 | 50S ribosomal protein L36. | Flagellar motor switch protein G; FliG is one of three proteins (FliG, FliN, FliM) that forms the rotor-mounted switch complex (C ring), located at the base of the basal body. This complex interacts with the CheY and CheZ chemotaxis proteins, in addition to contacting components of the motor that determine the direction of flagellar rotation. | 0.512 |
| AIL69466.1 | ihfA | VV93_v1c03670 | VV93_v1c17260 | 50S ribosomal protein L36. | Integration host factor subunit alpha; This protein is one of the two subunits of integration host factor, a specific DNA-binding protein that functions in genetic recombination as well as in transcriptional and translational control. Belongs to the bacterial histone-like protein family. | 0.730 |
| AIL69466.1 | rpmF | VV93_v1c03670 | VV93_v1c11880 | 50S ribosomal protein L36. | 50S ribosomal protein L32; Belongs to the bacterial ribosomal protein bL32 family. | 0.997 |
| AIL69466.1 | rpsP | VV93_v1c03670 | VV93_v1c24990 | 50S ribosomal protein L36. | 30S ribosomal protein S16; Belongs to the bacterial ribosomal protein bS16 family. | 0.994 |
| AIL69466.1 | rpsT | VV93_v1c03670 | VV93_v1c06240 | 50S ribosomal protein L36. | 30S ribosomal protein S20; Binds directly to 16S ribosomal RNA. | 0.959 |
| AIL71936.1 | AIL71937.1 | VV93_v1c28640 | VV93_v1c28650 | Peptidyl-prolyl cis-trans isomerase. | Nucleoid DNA-binding protein; Histone-like DNA-binding protein which is capable of wrapping DNA to stabilize it, and thus to prevent its denaturation under extreme environmental conditions. | 0.659 |
| AIL71937.1 | AIL69466.1 | VV93_v1c28650 | VV93_v1c03670 | Nucleoid DNA-binding protein; Histone-like DNA-binding protein which is capable of wrapping DNA to stabilize it, and thus to prevent its denaturation under extreme environmental conditions. | 50S ribosomal protein L36. | 0.767 |
| AIL71937.1 | AIL71936.1 | VV93_v1c28650 | VV93_v1c28640 | Nucleoid DNA-binding protein; Histone-like DNA-binding protein which is capable of wrapping DNA to stabilize it, and thus to prevent its denaturation under extreme environmental conditions. | Peptidyl-prolyl cis-trans isomerase. | 0.659 |
| AIL71937.1 | dnaA | VV93_v1c28650 | VV93_v1c00010 | Nucleoid DNA-binding protein; Histone-like DNA-binding protein which is capable of wrapping DNA to stabilize it, and thus to prevent its denaturation under extreme environmental conditions. | Chromosomal replication initiation protein; Plays an important role in the initiation and regulation of chromosomal replication. Binds to the origin of replication; it binds specifically double-stranded DNA at a 9 bp consensus (dnaA box): 5'- TTATC[CA]A[CA]A-3'. DnaA binds to ATP and to acidic phospholipids. | 0.641 |
| AIL71937.1 | flgD | VV93_v1c28650 | VV93_v1c08900 | Nucleoid DNA-binding protein; Histone-like DNA-binding protein which is capable of wrapping DNA to stabilize it, and thus to prevent its denaturation under extreme environmental conditions. | Flagellar basal body rod modification protein; Required for flagellar hook formation. May act as a scaffolding protein. | 0.512 |
| AIL71937.1 | fliG | VV93_v1c28650 | VV93_v1c21830 | Nucleoid DNA-binding protein; Histone-like DNA-binding protein which is capable of wrapping DNA to stabilize it, and thus to prevent its denaturation under extreme environmental conditions. | Flagellar motor switch protein G; FliG is one of three proteins (FliG, FliN, FliM) that forms the rotor-mounted switch complex (C ring), located at the base of the basal body. This complex interacts with the CheY and CheZ chemotaxis proteins, in addition to contacting components of the motor that determine the direction of flagellar rotation. | 0.512 |
| AIL71937.1 | fliM | VV93_v1c28650 | VV93_v1c21770 | Nucleoid DNA-binding protein; Histone-like DNA-binding protein which is capable of wrapping DNA to stabilize it, and thus to prevent its denaturation under extreme environmental conditions. | Flagellar motor switch protein FliM; FliM is one of three proteins (FliG, FliN, FliM) that forms the rotor-mounted switch complex (C ring), located at the base of the basal body. This complex interacts with the CheY and CheZ chemotaxis proteins, in addition to contacting components of the motor that determine the direction of flagellar rotation. | 0.512 |
| AIL71937.1 | ihfA | VV93_v1c28650 | VV93_v1c17260 | Nucleoid DNA-binding protein; Histone-like DNA-binding protein which is capable of wrapping DNA to stabilize it, and thus to prevent its denaturation under extreme environmental conditions. | Integration host factor subunit alpha; This protein is one of the two subunits of integration host factor, a specific DNA-binding protein that functions in genetic recombination as well as in transcriptional and translational control. Belongs to the bacterial histone-like protein family. | 0.649 |
| AIL71937.1 | rpmF | VV93_v1c28650 | VV93_v1c11880 | Nucleoid DNA-binding protein; Histone-like DNA-binding protein which is capable of wrapping DNA to stabilize it, and thus to prevent its denaturation under extreme environmental conditions. | 50S ribosomal protein L32; Belongs to the bacterial ribosomal protein bL32 family. | 0.778 |
| AIL71937.1 | rpsP | VV93_v1c28650 | VV93_v1c24990 | Nucleoid DNA-binding protein; Histone-like DNA-binding protein which is capable of wrapping DNA to stabilize it, and thus to prevent its denaturation under extreme environmental conditions. | 30S ribosomal protein S16; Belongs to the bacterial ribosomal protein bS16 family. | 0.755 |
| AIL71937.1 | rpsT | VV93_v1c28650 | VV93_v1c06240 | Nucleoid DNA-binding protein; Histone-like DNA-binding protein which is capable of wrapping DNA to stabilize it, and thus to prevent its denaturation under extreme environmental conditions. | 30S ribosomal protein S20; Binds directly to 16S ribosomal RNA. | 0.530 |
| dnaA | AIL71937.1 | VV93_v1c00010 | VV93_v1c28650 | Chromosomal replication initiation protein; Plays an important role in the initiation and regulation of chromosomal replication. Binds to the origin of replication; it binds specifically double-stranded DNA at a 9 bp consensus (dnaA box): 5'- TTATC[CA]A[CA]A-3'. DnaA binds to ATP and to acidic phospholipids. | Nucleoid DNA-binding protein; Histone-like DNA-binding protein which is capable of wrapping DNA to stabilize it, and thus to prevent its denaturation under extreme environmental conditions. | 0.641 |
| dnaA | ihfA | VV93_v1c00010 | VV93_v1c17260 | Chromosomal replication initiation protein; Plays an important role in the initiation and regulation of chromosomal replication. Binds to the origin of replication; it binds specifically double-stranded DNA at a 9 bp consensus (dnaA box): 5'- TTATC[CA]A[CA]A-3'. DnaA binds to ATP and to acidic phospholipids. | Integration host factor subunit alpha; This protein is one of the two subunits of integration host factor, a specific DNA-binding protein that functions in genetic recombination as well as in transcriptional and translational control. Belongs to the bacterial histone-like protein family. | 0.635 |
| flgD | AIL71937.1 | VV93_v1c08900 | VV93_v1c28650 | Flagellar basal body rod modification protein; Required for flagellar hook formation. May act as a scaffolding protein. | Nucleoid DNA-binding protein; Histone-like DNA-binding protein which is capable of wrapping DNA to stabilize it, and thus to prevent its denaturation under extreme environmental conditions. | 0.512 |
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