Export your current network:
... as a bitmap image:
file format is 'PNG': portable network graphic
... as a high-resolution bitmap:
same PNG format, but at higher resolution
... as a vector graphic:
SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc
... as short tabular text output:
TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)
... as tabular text output:
TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)
... as an XML summary:
structured XML interaction data, according to the 'PSI-MI' data standard
... protein node degrees:
node degree of proteins in your network (given the current score cut-off)
... network coordinates:
a flat-file format describing the coordinates and colors of nodes in the network
... protein sequences:
MFA: multi-fasta format - containing the aminoacid sequences in the network
... protein annotations:
a tab-delimited file describing the names, domains and descriptions of proteins in your network
... functional annotations:
a tab-delimited file containing all known functional terms of protiens in your network
Browse interactions in tabular form:
node1 | node2 | node1 accession | node2 accession | node1 annotation | node2 annotation | score |
AIL69466.1 | AIL72264.1 | VV93_v1c03670 | VV93_v1c31980 | 50S ribosomal protein L36. | Membrane protein. | 0.545 |
AIL69466.1 | rplC | VV93_v1c03670 | VV93_v1c03460 | 50S ribosomal protein L36. | 50S ribosomal protein L3; One of the primary rRNA binding proteins, it binds directly near the 3'-end of the 23S rRNA, where it nucleates assembly of the 50S subunit. | 0.993 |
AIL69466.1 | rplO | VV93_v1c03670 | VV93_v1c03650 | 50S ribosomal protein L36. | 50S ribosomal protein L15; Binds to the 23S rRNA; Belongs to the universal ribosomal protein uL15 family. | 0.996 |
AIL69466.1 | rplP | VV93_v1c03670 | VV93_v1c03530 | 50S ribosomal protein L36. | 50S ribosomal protein L16; Binds 23S rRNA and is also seen to make contacts with the A and possibly P site tRNAs; Belongs to the universal ribosomal protein uL16 family. | 0.993 |
AIL69466.1 | rplT | VV93_v1c03670 | VV93_v1c17020 | 50S ribosomal protein L36. | 50S ribosomal protein L20; Binds directly to 23S ribosomal RNA and is necessary for the in vitro assembly process of the 50S ribosomal subunit. It is not involved in the protein synthesizing functions of that subunit. | 0.982 |
AIL69466.1 | rpsE | VV93_v1c03670 | VV93_v1c03630 | 50S ribosomal protein L36. | 30S ribosomal protein S5; With S4 and S12 plays an important role in translational accuracy; Belongs to the universal ribosomal protein uS5 family. | 0.996 |
AIL69466.1 | rpsL | VV93_v1c03670 | VV93_v1c27600 | 50S ribosomal protein L36. | 30S ribosomal protein S12; With S4 and S5 plays an important role in translational accuracy. | 0.992 |
AIL69466.1 | rpsQ | VV93_v1c03670 | VV93_v1c03550 | 50S ribosomal protein L36. | 30S ribosomal protein S17; One of the primary rRNA binding proteins, it binds specifically to the 5'-end of 16S ribosomal RNA. | 0.994 |
AIL69466.1 | rpsT | VV93_v1c03670 | VV93_v1c06240 | 50S ribosomal protein L36. | 30S ribosomal protein S20; Binds directly to 16S ribosomal RNA. | 0.959 |
AIL69466.1 | rpsU | VV93_v1c03670 | VV93_v1c05060 | 50S ribosomal protein L36. | 30S ribosomal protein S21; Belongs to the bacterial ribosomal protein bS21 family. | 0.948 |
AIL72264.1 | AIL69466.1 | VV93_v1c31980 | VV93_v1c03670 | Membrane protein. | 50S ribosomal protein L36. | 0.545 |
AIL72264.1 | rplC | VV93_v1c31980 | VV93_v1c03460 | Membrane protein. | 50S ribosomal protein L3; One of the primary rRNA binding proteins, it binds directly near the 3'-end of the 23S rRNA, where it nucleates assembly of the 50S subunit. | 0.529 |
AIL72264.1 | rplO | VV93_v1c31980 | VV93_v1c03650 | Membrane protein. | 50S ribosomal protein L15; Binds to the 23S rRNA; Belongs to the universal ribosomal protein uL15 family. | 0.547 |
AIL72264.1 | rplP | VV93_v1c31980 | VV93_v1c03530 | Membrane protein. | 50S ribosomal protein L16; Binds 23S rRNA and is also seen to make contacts with the A and possibly P site tRNAs; Belongs to the universal ribosomal protein uL16 family. | 0.523 |
AIL72264.1 | rplT | VV93_v1c31980 | VV93_v1c17020 | Membrane protein. | 50S ribosomal protein L20; Binds directly to 23S ribosomal RNA and is necessary for the in vitro assembly process of the 50S ribosomal subunit. It is not involved in the protein synthesizing functions of that subunit. | 0.596 |
AIL72264.1 | rpsE | VV93_v1c31980 | VV93_v1c03630 | Membrane protein. | 30S ribosomal protein S5; With S4 and S12 plays an important role in translational accuracy; Belongs to the universal ribosomal protein uS5 family. | 0.534 |
AIL72264.1 | rpsL | VV93_v1c31980 | VV93_v1c27600 | Membrane protein. | 30S ribosomal protein S12; With S4 and S5 plays an important role in translational accuracy. | 0.586 |
AIL72264.1 | rpsQ | VV93_v1c31980 | VV93_v1c03550 | Membrane protein. | 30S ribosomal protein S17; One of the primary rRNA binding proteins, it binds specifically to the 5'-end of 16S ribosomal RNA. | 0.547 |
AIL72264.1 | rpsT | VV93_v1c31980 | VV93_v1c06240 | Membrane protein. | 30S ribosomal protein S20; Binds directly to 16S ribosomal RNA. | 0.521 |
AIL72264.1 | rpsU | VV93_v1c31980 | VV93_v1c05060 | Membrane protein. | 30S ribosomal protein S21; Belongs to the bacterial ribosomal protein bS21 family. | 0.562 |
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