Export your current network:
... as a bitmap image:
file format is 'PNG': portable network graphic
... as a high-resolution bitmap:
same PNG format, but at higher resolution
... as a vector graphic:
SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc
... as short tabular text output:
TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)
... as tabular text output:
TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)
... as an XML summary:
structured XML interaction data, according to the 'PSI-MI' data standard
... protein node degrees:
node degree of proteins in your network (given the current score cut-off)
... network coordinates:
a flat-file format describing the coordinates and colors of nodes in the network
... protein sequences:
MFA: multi-fasta format - containing the aminoacid sequences in the network
... protein annotations:
a tab-delimited file describing the names, domains and descriptions of proteins in your network
... functional annotations:
a tab-delimited file containing all known functional terms of protiens in your network
Browse interactions in tabular form:
node1 | node2 | node1 accession | node2 accession | node1 annotation | node2 annotation | score |
AIL73066.1 | prfB | VV93_v1c40100 | VV93_v1c06070 | Hypothetical protein. | Protein chain release factor B; Peptide chain release factor 2 directs the termination of translation in response to the peptide chain termination codons UGA and UAA. | 0.878 |
AIL73066.1 | rplJ | VV93_v1c40100 | VV93_v1c28780 | Hypothetical protein. | 50S ribosomal protein L10; Forms part of the ribosomal stalk, playing a central role in the interaction of the ribosome with GTP-bound translation factors. Belongs to the universal ribosomal protein uL10 family. | 0.881 |
AIL73066.1 | rplQ | VV93_v1c40100 | VV93_v1c03720 | Hypothetical protein. | 50S ribosomal protein L17. | 0.860 |
AIL73066.1 | rpmB | VV93_v1c40100 | VV93_v1c02780 | Hypothetical protein. | 50S ribosomal protein L28; Belongs to the bacterial ribosomal protein bL28 family. | 0.853 |
AIL73066.1 | rpmF | VV93_v1c40100 | VV93_v1c11880 | Hypothetical protein. | 50S ribosomal protein L32; Belongs to the bacterial ribosomal protein bL32 family. | 0.856 |
AIL73066.1 | rpmG | VV93_v1c40100 | VV93_v1c02790 | Hypothetical protein. | 50S ribosomal protein L33; Belongs to the bacterial ribosomal protein bL33 family. | 0.853 |
AIL73066.1 | rpsD | VV93_v1c40100 | VV93_v1c03700 | Hypothetical protein. | 30S ribosomal protein S4; One of the primary rRNA binding proteins, it binds directly to 16S rRNA where it nucleates assembly of the body of the 30S subunit. | 0.854 |
AIL73066.1 | rpsJ | VV93_v1c40100 | VV93_v1c03450 | Hypothetical protein. | 30S ribosomal protein S10; Involved in the binding of tRNA to the ribosomes. Belongs to the universal ribosomal protein uS10 family. | 0.853 |
AIL73066.1 | rpsO | VV93_v1c40100 | VV93_v1c24220 | Hypothetical protein. | 30S ribosomal protein S15; One of the primary rRNA binding proteins, it binds directly to 16S rRNA where it helps nucleate assembly of the platform of the 30S subunit by binding and bridging several RNA helices of the 16S rRNA. | 0.859 |
AIL73066.1 | rpsU | VV93_v1c40100 | VV93_v1c05060 | Hypothetical protein. | 30S ribosomal protein S21; Belongs to the bacterial ribosomal protein bS21 family. | 0.859 |
prfB | AIL73066.1 | VV93_v1c06070 | VV93_v1c40100 | Protein chain release factor B; Peptide chain release factor 2 directs the termination of translation in response to the peptide chain termination codons UGA and UAA. | Hypothetical protein. | 0.878 |
prfB | rplJ | VV93_v1c06070 | VV93_v1c28780 | Protein chain release factor B; Peptide chain release factor 2 directs the termination of translation in response to the peptide chain termination codons UGA and UAA. | 50S ribosomal protein L10; Forms part of the ribosomal stalk, playing a central role in the interaction of the ribosome with GTP-bound translation factors. Belongs to the universal ribosomal protein uL10 family. | 0.728 |
prfB | rplQ | VV93_v1c06070 | VV93_v1c03720 | Protein chain release factor B; Peptide chain release factor 2 directs the termination of translation in response to the peptide chain termination codons UGA and UAA. | 50S ribosomal protein L17. | 0.939 |
prfB | rpmB | VV93_v1c06070 | VV93_v1c02780 | Protein chain release factor B; Peptide chain release factor 2 directs the termination of translation in response to the peptide chain termination codons UGA and UAA. | 50S ribosomal protein L28; Belongs to the bacterial ribosomal protein bL28 family. | 0.903 |
prfB | rpmF | VV93_v1c06070 | VV93_v1c11880 | Protein chain release factor B; Peptide chain release factor 2 directs the termination of translation in response to the peptide chain termination codons UGA and UAA. | 50S ribosomal protein L32; Belongs to the bacterial ribosomal protein bL32 family. | 0.901 |
prfB | rpmG | VV93_v1c06070 | VV93_v1c02790 | Protein chain release factor B; Peptide chain release factor 2 directs the termination of translation in response to the peptide chain termination codons UGA and UAA. | 50S ribosomal protein L33; Belongs to the bacterial ribosomal protein bL33 family. | 0.908 |
prfB | rpsD | VV93_v1c06070 | VV93_v1c03700 | Protein chain release factor B; Peptide chain release factor 2 directs the termination of translation in response to the peptide chain termination codons UGA and UAA. | 30S ribosomal protein S4; One of the primary rRNA binding proteins, it binds directly to 16S rRNA where it nucleates assembly of the body of the 30S subunit. | 0.909 |
prfB | rpsJ | VV93_v1c06070 | VV93_v1c03450 | Protein chain release factor B; Peptide chain release factor 2 directs the termination of translation in response to the peptide chain termination codons UGA and UAA. | 30S ribosomal protein S10; Involved in the binding of tRNA to the ribosomes. Belongs to the universal ribosomal protein uS10 family. | 0.900 |
prfB | rpsO | VV93_v1c06070 | VV93_v1c24220 | Protein chain release factor B; Peptide chain release factor 2 directs the termination of translation in response to the peptide chain termination codons UGA and UAA. | 30S ribosomal protein S15; One of the primary rRNA binding proteins, it binds directly to 16S rRNA where it helps nucleate assembly of the platform of the 30S subunit by binding and bridging several RNA helices of the 16S rRNA. | 0.909 |
prfB | rpsU | VV93_v1c06070 | VV93_v1c05060 | Protein chain release factor B; Peptide chain release factor 2 directs the termination of translation in response to the peptide chain termination codons UGA and UAA. | 30S ribosomal protein S21; Belongs to the bacterial ribosomal protein bS21 family. | 0.837 |
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