STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
AQI88_16255Decarboxylase; Derived by automated computational analysis using gene prediction method: Protein Homology; Belongs to the Orn/Lys/Arg decarboxylase class-II family. (403 aa)    
Predicted Functional Partners:
KUM95622.1
Iron transporter; Derived by automated computational analysis using gene prediction method: Protein Homology.
 
 
 0.943
dapF
Diaminopimelate epimerase; Catalyzes the stereoinversion of LL-2,6-diaminoheptanedioate (L,L-DAP) to meso-diaminoheptanedioate (meso-DAP), a precursor of L- lysine and an essential component of the bacterial peptidoglycan.
 
 0.906
lysA
Diaminopimelate decarboxylase; Specifically catalyzes the decarboxylation of meso- diaminopimelate (meso-DAP) to L-lysine.
  
  
 
0.857
KUM95760.1
ATP-binding protein; Derived by automated computational analysis using gene prediction method: Protein Homology.
  
 
 0.827
murE
UDP-N-acetylmuramoylalanyl-D-glutamate--2, 6-diaminopimelate ligase; Catalyzes the addition of meso-diaminopimelic acid to the nucleotide precursor UDP-N-acetylmuramoyl-L-alanyl-D-glutamate (UMAG) in the biosynthesis of bacterial cell-wall peptidoglycan. Belongs to the MurCDEF family. MurE subfamily.
     
 0.820
KUM97334.1
Siderophore biosynthesis protein; Derived by automated computational analysis using gene prediction method: Protein Homology.
 
 
 0.811
KUM96203.1
Amine oxidase; Derived by automated computational analysis using gene prediction method: Protein Homology.
     
 0.810
KUM98540.1
Saccharopine dehydrogenase; Derived by automated computational analysis using gene prediction method: Protein Homology.
     
 0.808
KUM97408.1
Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology.
     
 0.806
dapB
4-hydroxy-tetrahydrodipicolinate reductase; Catalyzes the conversion of 4-hydroxy-tetrahydrodipicolinate (HTPA) to tetrahydrodipicolinate; Belongs to the DapB family.
 
 
 0.790
Your Current Organism:
Streptomyces cellostaticus
NCBI taxonomy Id: 67285
Other names: ATCC 23894, CBS 680.68, DSM 40189, IFO 12849, ISP 5189, JCM 4183, JCM 4631, NBRC 12849, NCIMB 9830, NRRL-ISP 5189, S. cellostaticus
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.