STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
nuoEFormate dehydrogenase; Derived by automated computational analysis using gene prediction method: Protein Homology. (171 aa)    
Predicted Functional Partners:
nqo1
Formate dehydrogenase; Derived by automated computational analysis using gene prediction method: Protein Homology.
 0.999
AMG28999.1
Formate dehydrogenase; Derived by automated computational analysis using gene prediction method: Protein Homology.
 0.999
hoxU
NADP oxidoreductase; Frameshifted; Derived by automated computational analysis using gene prediction method: Protein Homology.
 
 0.999
fbcH
Derived by automated computational analysis using gene prediction method: Protein Homology.
   
 
 0.996
petA
Ubiquinol-cytochrome c reductase iron-sulfur subunit; Component of the ubiquinol-cytochrome c reductase complex (complex III or cytochrome b-c1 complex), which is a respiratory chain that generates an electrochemical potential coupled to ATP synthesis.
   
 
 0.996
acpP
Acyl carrier protein; Carrier of the growing fatty acid chain in fatty acid biosynthesis.
  
 0.993
AMG29000.1
Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology.
   
 0.992
nuoI
(Fe-S)-binding protein; Derived by automated computational analysis using gene prediction method: Protein Homology.
  
 0.987
ptrA_1
Peptidase M16; Derived by automated computational analysis using gene prediction method: Protein Homology.
   
 
 0.987
napG
Part of NapHG quinol dehydrogenase; couples electron transfer from ubiquinone-ubiquinol couple via NapC/B to NapA; secreted by twin arginine translocation pathway; Derived by automated computational analysis using gene prediction method: Protein Homology.
  
 0.987
Your Current Organism:
Grimontia hollisae
NCBI taxonomy Id: 673
Other names: ATCC 33564, CAIM 625, CCUG 13625, CDC 0075-80, CIP 101886, DSM 15132, G. hollisae, IMET 12291, LMG 17719, LMG:17719, NCTC 11640, Special Bacteriology group EF-13, Vibrio hollisae
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