STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
cobSCobalamin biosynthesis protein CobS; Derived by automated computational analysis using gene prediction method: Protein Homology. (327 aa)    
Predicted Functional Partners:
cobT
Aerobic cobaltochelatase CobT subunit; Derived by automated computational analysis using gene prediction method: Protein Homology.
 
 
 0.996
yvqK
Cobalamin adenosyltransferase; Derived by automated computational analysis using gene prediction method: Protein Homology.
     
  0.900
btuR
cob(I)yrinic acid a,c-diamide adenosyltransferase; Required for both de novo synthesis of the corrin ring for the assimilation of exogenous corrinoids. Participates in the adenosylation of a variety of incomplete and complete corrinoids.
     
  0.900
AMG31839.1
Rubisco activation protein CbbO; Derived by automated computational analysis using gene prediction method: Protein Homology.
  
  
 0.871
iclR_1
IclR family transcriptional regulator; Derived by automated computational analysis using gene prediction method: Protein Homology.
 
    0.636
AL542_01495
Sulfoacetaldehyde acetyltransferase; Catalyzes the formation of acetyl phosphate and sulfite from 2-sulfoacetaldehyde; is active when grown on taurine as a sole carbon source; frameshifted; Derived by automated computational analysis using gene prediction method: Protein Homology.
 
     0.512
ctaE
MFS transporter; Derived by automated computational analysis using gene prediction method: Protein Homology.
  
  
 0.456
AMG31359.1
Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology; Belongs to the UPF0260 family.
  
     0.446
mltB
Lytic transglycosylase; Derived by automated computational analysis using gene prediction method: Protein Homology.
 
     0.439
yccM_1
Catalyzes the oxidation of acetaldehyde, benzaldehyde, propionaldehyde and other aldehydes; frameshifted; Derived by automated computational analysis using gene prediction method: Protein Homology.
   
  
 0.433
Your Current Organism:
Grimontia hollisae
NCBI taxonomy Id: 673
Other names: ATCC 33564, CAIM 625, CCUG 13625, CDC 0075-80, CIP 101886, DSM 15132, G. hollisae, IMET 12291, LMG 17719, LMG:17719, NCTC 11640, Special Bacteriology group EF-13, Vibrio hollisae
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