Export your current network:
... as a vector graphic:
SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc
... as short tabular text output:
TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)
... as tabular text output:
TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)
... as an XML summary:
structured XML interaction data, according to the 'PSI-MI' data standard
... protein node degrees:
node degree of proteins in your network (given the current score cut-off)
... network coordinates:
a flat-file format describing the coordinates and colors of nodes in the network
... protein sequences:
MFA: multi-fasta format - containing the aminoacid sequences in the network
... protein annotations:
a tab-delimited file describing the names, domains and descriptions of proteins in your network
... functional annotations:
a tab-delimited file containing all known functional terms of proteins in your network
Browse interactions in tabular form:
| node1 | node2 | node1 accession | node2 accession | node1 annotation | node2 annotation | score |
| AMG29243.1 | AMG29246.1 | AL542_02020 | AL542_02040 | Ligand-gated channel; Derived by automated computational analysis using gene prediction method: Protein Homology. | Ferric siderophore ABC transporter substrate-binding protein; Interacts with outer membrane receptor proteins that carry out high-affinity binding and energy dependent uptake into the periplasmic space of specific substrates. It could act to transduce energy from the cytoplasmic membrane to specific energy-requiring processes in the outer membrane, resulting in the release into the periplasm of ligands bound by these outer membrane proteins. Belongs to the TonB family. | 0.916 |
| AMG29243.1 | AMG29248.1 | AL542_02020 | AL542_02050 | Ligand-gated channel; Derived by automated computational analysis using gene prediction method: Protein Homology. | Biopolymer transporter ExbD; Derived by automated computational analysis using gene prediction method: Protein Homology. | 0.809 |
| AMG29243.1 | btuB | AL542_02020 | AL542_10400 | Ligand-gated channel; Derived by automated computational analysis using gene prediction method: Protein Homology. | Outer membrane vitamin B12 receptor BtuB; Involved in the active translocation of vitamin B12 (cyanocobalamin) across the outer membrane to the periplasmic space. It derives its energy for transport by interacting with the trans- periplasmic membrane protein TonB; Belongs to the TonB-dependent receptor family. BtuB (TC 1.B.14.3.1) subfamily. | 0.443 |
| AMG29243.1 | exbB_2 | AL542_02020 | AL542_02045 | Ligand-gated channel; Derived by automated computational analysis using gene prediction method: Protein Homology. | Biopolymer transporter ExbB; Derived by automated computational analysis using gene prediction method: Protein Homology. | 0.657 |
| AMG29246.1 | AMG29243.1 | AL542_02040 | AL542_02020 | Ferric siderophore ABC transporter substrate-binding protein; Interacts with outer membrane receptor proteins that carry out high-affinity binding and energy dependent uptake into the periplasmic space of specific substrates. It could act to transduce energy from the cytoplasmic membrane to specific energy-requiring processes in the outer membrane, resulting in the release into the periplasm of ligands bound by these outer membrane proteins. Belongs to the TonB family. | Ligand-gated channel; Derived by automated computational analysis using gene prediction method: Protein Homology. | 0.916 |
| AMG29246.1 | AMG29248.1 | AL542_02040 | AL542_02050 | Ferric siderophore ABC transporter substrate-binding protein; Interacts with outer membrane receptor proteins that carry out high-affinity binding and energy dependent uptake into the periplasmic space of specific substrates. It could act to transduce energy from the cytoplasmic membrane to specific energy-requiring processes in the outer membrane, resulting in the release into the periplasm of ligands bound by these outer membrane proteins. Belongs to the TonB family. | Biopolymer transporter ExbD; Derived by automated computational analysis using gene prediction method: Protein Homology. | 0.975 |
| AMG29246.1 | AMG29439.1 | AL542_02040 | AL542_03165 | Ferric siderophore ABC transporter substrate-binding protein; Interacts with outer membrane receptor proteins that carry out high-affinity binding and energy dependent uptake into the periplasmic space of specific substrates. It could act to transduce energy from the cytoplasmic membrane to specific energy-requiring processes in the outer membrane, resulting in the release into the periplasm of ligands bound by these outer membrane proteins. Belongs to the TonB family. | Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology. | 0.808 |
| AMG29246.1 | AMG31785.1 | AL542_02040 | AL542_16530 | Ferric siderophore ABC transporter substrate-binding protein; Interacts with outer membrane receptor proteins that carry out high-affinity binding and energy dependent uptake into the periplasmic space of specific substrates. It could act to transduce energy from the cytoplasmic membrane to specific energy-requiring processes in the outer membrane, resulting in the release into the periplasm of ligands bound by these outer membrane proteins. Belongs to the TonB family. | Hypothetical protein; Derived by automated computational analysis using gene prediction method: GeneMarkS+. | 0.792 |
| AMG29246.1 | btuB | AL542_02040 | AL542_10400 | Ferric siderophore ABC transporter substrate-binding protein; Interacts with outer membrane receptor proteins that carry out high-affinity binding and energy dependent uptake into the periplasmic space of specific substrates. It could act to transduce energy from the cytoplasmic membrane to specific energy-requiring processes in the outer membrane, resulting in the release into the periplasm of ligands bound by these outer membrane proteins. Belongs to the TonB family. | Outer membrane vitamin B12 receptor BtuB; Involved in the active translocation of vitamin B12 (cyanocobalamin) across the outer membrane to the periplasmic space. It derives its energy for transport by interacting with the trans- periplasmic membrane protein TonB; Belongs to the TonB-dependent receptor family. BtuB (TC 1.B.14.3.1) subfamily. | 0.929 |
| AMG29246.1 | exbB_2 | AL542_02040 | AL542_02045 | Ferric siderophore ABC transporter substrate-binding protein; Interacts with outer membrane receptor proteins that carry out high-affinity binding and energy dependent uptake into the periplasmic space of specific substrates. It could act to transduce energy from the cytoplasmic membrane to specific energy-requiring processes in the outer membrane, resulting in the release into the periplasm of ligands bound by these outer membrane proteins. Belongs to the TonB family. | Biopolymer transporter ExbB; Derived by automated computational analysis using gene prediction method: Protein Homology. | 0.969 |
| AMG29246.1 | exbD | AL542_02040 | AL542_03160 | Ferric siderophore ABC transporter substrate-binding protein; Interacts with outer membrane receptor proteins that carry out high-affinity binding and energy dependent uptake into the periplasmic space of specific substrates. It could act to transduce energy from the cytoplasmic membrane to specific energy-requiring processes in the outer membrane, resulting in the release into the periplasm of ligands bound by these outer membrane proteins. Belongs to the TonB family. | Biopolymer transporter ExbD; Derived by automated computational analysis using gene prediction method: Protein Homology. | 0.909 |
| AMG29246.1 | lpp | AL542_02040 | AL542_02185 | Ferric siderophore ABC transporter substrate-binding protein; Interacts with outer membrane receptor proteins that carry out high-affinity binding and energy dependent uptake into the periplasmic space of specific substrates. It could act to transduce energy from the cytoplasmic membrane to specific energy-requiring processes in the outer membrane, resulting in the release into the periplasm of ligands bound by these outer membrane proteins. Belongs to the TonB family. | Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology. | 0.793 |
| AMG29246.1 | tolQ | AL542_02040 | AL542_03885 | Ferric siderophore ABC transporter substrate-binding protein; Interacts with outer membrane receptor proteins that carry out high-affinity binding and energy dependent uptake into the periplasmic space of specific substrates. It could act to transduce energy from the cytoplasmic membrane to specific energy-requiring processes in the outer membrane, resulting in the release into the periplasm of ligands bound by these outer membrane proteins. Belongs to the TonB family. | Protein TolQ; Part of the Tol-Pal system, which plays a role in outer membrane invagination during cell division and is important for maintaining outer membrane integrity. | 0.866 |
| AMG29246.1 | tolR | AL542_02040 | AL542_03880 | Ferric siderophore ABC transporter substrate-binding protein; Interacts with outer membrane receptor proteins that carry out high-affinity binding and energy dependent uptake into the periplasmic space of specific substrates. It could act to transduce energy from the cytoplasmic membrane to specific energy-requiring processes in the outer membrane, resulting in the release into the periplasm of ligands bound by these outer membrane proteins. Belongs to the TonB family. | Protein TolR; Part of the Tol-Pal system, which plays a role in outer membrane invagination during cell division and is important for maintaining outer membrane integrity. | 0.920 |
| AMG29248.1 | AMG29243.1 | AL542_02050 | AL542_02020 | Biopolymer transporter ExbD; Derived by automated computational analysis using gene prediction method: Protein Homology. | Ligand-gated channel; Derived by automated computational analysis using gene prediction method: Protein Homology. | 0.809 |
| AMG29248.1 | AMG29246.1 | AL542_02050 | AL542_02040 | Biopolymer transporter ExbD; Derived by automated computational analysis using gene prediction method: Protein Homology. | Ferric siderophore ABC transporter substrate-binding protein; Interacts with outer membrane receptor proteins that carry out high-affinity binding and energy dependent uptake into the periplasmic space of specific substrates. It could act to transduce energy from the cytoplasmic membrane to specific energy-requiring processes in the outer membrane, resulting in the release into the periplasm of ligands bound by these outer membrane proteins. Belongs to the TonB family. | 0.975 |
| AMG29248.1 | AMG29439.1 | AL542_02050 | AL542_03165 | Biopolymer transporter ExbD; Derived by automated computational analysis using gene prediction method: Protein Homology. | Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology. | 0.838 |
| AMG29248.1 | exbB_2 | AL542_02050 | AL542_02045 | Biopolymer transporter ExbD; Derived by automated computational analysis using gene prediction method: Protein Homology. | Biopolymer transporter ExbB; Derived by automated computational analysis using gene prediction method: Protein Homology. | 0.981 |
| AMG29248.1 | tolQ | AL542_02050 | AL542_03885 | Biopolymer transporter ExbD; Derived by automated computational analysis using gene prediction method: Protein Homology. | Protein TolQ; Part of the Tol-Pal system, which plays a role in outer membrane invagination during cell division and is important for maintaining outer membrane integrity. | 0.828 |
| AMG29439.1 | AMG29246.1 | AL542_03165 | AL542_02040 | Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology. | Ferric siderophore ABC transporter substrate-binding protein; Interacts with outer membrane receptor proteins that carry out high-affinity binding and energy dependent uptake into the periplasmic space of specific substrates. It could act to transduce energy from the cytoplasmic membrane to specific energy-requiring processes in the outer membrane, resulting in the release into the periplasm of ligands bound by these outer membrane proteins. Belongs to the TonB family. | 0.808 |
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