Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
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Co-occurrence
Co-expression
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[Homology]
Score
pcpPyrrolidone-carboxylate peptidase; Removes 5-oxoproline from various penultimate amino acid residues except L-proline; Belongs to the peptidase C15 family. (212 aa)    
Predicted Functional Partners:
AMG29369.1
Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology.
 
     0.964
AMG29368.1
Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology.
 
    0.957
AMG31907.1
ATP-dependent helicase; Derived by automated computational analysis using gene prediction method: Protein Homology.
  
 
 
 0.841
AMG30370.1
Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology.
   
   0.822
acuC
Prepilin peptidase; Frameshifted; Derived by automated computational analysis using gene prediction method: Protein Homology.
    
   0.813
ftsH_3
AAA family ATPase; Derived by automated computational analysis using gene prediction method: Protein Homology.
    
   0.810
glpF_2
Transposase; Incomplete; partial on complete genome; missing start; Derived by automated computational analysis using gene prediction method: Protein Homology; Belongs to the MIP/aquaporin (TC 1.A.8) family.
    
   0.807
AMG30319.1
Capsular biosynthesis protein; Derived by automated computational analysis using gene prediction method: Protein Homology.
    
   0.801
ndk_1
Nucleoside-diphosphate kinase; Major role in the synthesis of nucleoside triphosphates other than ATP. The ATP gamma phosphate is transferred to the NDP beta phosphate via a ping-pong mechanism, using a phosphorylated active-site intermediate; Belongs to the NDK family.
    
   0.796
ospG
Hypothetical protein; Derived by automated computational analysis using gene prediction method: GeneMarkS+.
   
   0.769
Your Current Organism:
Grimontia hollisae
NCBI taxonomy Id: 673
Other names: ATCC 33564, CAIM 625, CCUG 13625, CDC 0075-80, CIP 101886, DSM 15132, G. hollisae, IMET 12291, LMG 17719, LMG:17719, NCTC 11640, Special Bacteriology group EF-13, Vibrio hollisae
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