STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
vanTFucose 4-O-acetylase; Derived by automated computational analysis using gene prediction method: Protein Homology. (356 aa)    
Predicted Functional Partners:
AL542_01115
Lactate dehydrogenase; Frameshifted; Derived by automated computational analysis using gene prediction method: Protein Homology.
  
     0.682
viaA
Protein viaA; Derived by automated computational analysis using gene prediction method: Protein Homology.
  
     0.611
crl
XRE family transcriptional regulator; Binds to the sigma-S subunit of RNA polymerase, activating expression of sigma-S-regulated genes. Stimulates RNA polymerase holoenzyme formation and may bind to several other sigma factors, such as sigma-70 and sigma-32; Belongs to the Crl family.
  
     0.584
luxR
LuxR family transcriptional regulator; Derived by automated computational analysis using gene prediction method: Protein Homology.
  
     0.569
AMG28941.1
Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology.
  
     0.566
DptF
DNA phosphorothioation-dependent restriction protein DptF; Derived by automated computational analysis using gene prediction method: Protein Homology.
  
     0.561
yiaH
Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology.
  
     0.541
maa_2
Polysaccharide deacetylase; Derived by automated computational analysis using gene prediction method: Protein Homology.
 
    0.533
DptH
DNA phosphorothioation-dependent restriction protein DptH; Derived by automated computational analysis using gene prediction method: Protein Homology.
  
     0.528
AMG31252.1
Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology.
  
    0.510
Your Current Organism:
Grimontia hollisae
NCBI taxonomy Id: 673
Other names: ATCC 33564, CAIM 625, CCUG 13625, CDC 0075-80, CIP 101886, DSM 15132, G. hollisae, IMET 12291, LMG 17719, LMG:17719, NCTC 11640, Special Bacteriology group EF-13, Vibrio hollisae
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