Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
yfiNHypothetical protein; Derived by automated computational analysis using gene prediction method: GeneMarkS+. (434 aa)    
Predicted Functional Partners:
ycgG_2
Signal protein; Derived by automated computational analysis using gene prediction method: Protein Homology.
 
    0.903
yjcC_1
Hypothetical protein; Derived by automated computational analysis using gene prediction method: GeneMarkS+.
   
 0.878
gmr_3
Hydroxyglutarate oxidase; Catalyzed the formation of 2-ketoglutarate from 2-hydroxyglutarate; frameshifted; Derived by automated computational analysis using gene prediction method: Protein Homology.
 
 
 0.844
ycgG_1
Diguanylate phosphodiesterase; Derived by automated computational analysis using gene prediction method: Protein Homology.
 
   0.844
rpfG_1
Two-component system response regulator; Derived by automated computational analysis using gene prediction method: Protein Homology.
 
  
 0.821
cph2_5
Signal protein; Derived by automated computational analysis using gene prediction method: Protein Homology.
  
    0.810
yjcC_2
Diguanylate cyclase; Derived by automated computational analysis using gene prediction method: Protein Homology.
  
    0.806
csrD_2
c-di-GMP receptor LapD; Derived by automated computational analysis using gene prediction method: Protein Homology.
  
    0.802
csrD_3
Diguanylate cyclase; Derived by automated computational analysis using gene prediction method: Protein Homology.
 
    0.797
csrD_1
Diguanylate phosphodiesterase; Derived by automated computational analysis using gene prediction method: Protein Homology.
  
  
 0.797
Your Current Organism:
Grimontia hollisae
NCBI taxonomy Id: 673
Other names: ATCC 33564, CAIM 625, CCUG 13625, CDC 0075-80, CIP 101886, DSM 15132, G. hollisae, IMET 12291, LMG 17719, LMG:17719, NCTC 11640, Special Bacteriology group EF-13, Vibrio hollisae
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