STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
PseFPseudaminic acid cytidylyltransferase; Derived by automated computational analysis using gene prediction method: Protein Homology. (229 aa)    
Predicted Functional Partners:
PseI
Pseudaminic acid synthase; Derived by automated computational analysis using gene prediction method: Protein Homology.
 
 0.987
PseG
UDP-2,4-diacetamido-2,4, 6-trideoxy-beta-L-altropyranose hydrolase; Derived by automated computational analysis using gene prediction method: Protein Homology.
 
   
 0.946
spsE_2
Pseudaminic acid synthase; Derived by automated computational analysis using gene prediction method: Protein Homology.
 
 0.945
neuA_2
Pseudaminic acid cytidylyltransferase; Derived by automated computational analysis using gene prediction method: Protein Homology.
  
  
 
0.903
PseC
UDP-4-amino-4, 6-dideoxy-N-acetyl-beta-L-altrosamine transaminase; Derived by automated computational analysis using gene prediction method: Protein Homology.
 
  
 0.868
kdsC
3-deoxy-D-manno-octulosonate 8-phosphate phosphatase; Catalyzes the hydrolysis of 3-deoxy-D-manno-octulosonate 8- phosphate (KDO 8-P) to 3-deoxy-D-manno-octulosonate (KDO) and inorganic phosphate; Belongs to the KdsC family.
 
   0.845
PseB
UDP-N-acetylglucosamine 4,6-dehydratase (inverting); Derived by automated computational analysis using gene prediction method: Protein Homology.
 
  
 0.836
AMG29674.1
UDP-2,4-diacetamido-2,4, 6-trideoxy-beta-L-altropyranose hydrolase; Derived by automated computational analysis using gene prediction method: Protein Homology.
 
   
 0.798
TagD
Glycerol-3-phosphate cytidylyltransferase; Derived by automated computational analysis using gene prediction method: Protein Homology.
       0.766
AMG29813.1
Hypothetical protein; Derived by automated computational analysis using gene prediction method: GeneMarkS+.
 
   
 0.655
Your Current Organism:
Grimontia hollisae
NCBI taxonomy Id: 673
Other names: ATCC 33564, CAIM 625, CCUG 13625, CDC 0075-80, CIP 101886, DSM 15132, G. hollisae, IMET 12291, LMG 17719, LMG:17719, NCTC 11640, Special Bacteriology group EF-13, Vibrio hollisae
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