Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
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colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
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[Homology]
Score
pilT_1Type IV pili twitching motility protein PilT; Derived by automated computational analysis using gene prediction method: Protein Homology. (345 aa)    
Predicted Functional Partners:
pilT_2
Type IV pili twitching motility protein PilT; Derived by automated computational analysis using gene prediction method: Protein Homology.
 
  
0.905
outO
Methyltransferase; Cleaves type-4 fimbrial leader sequence and methylates the N- terminal (generally Phe) residue.
 
   
 0.885
epsF_2
Type II secretion system protein F; Derived by automated computational analysis using gene prediction method: Protein Homology.
 
  
 0.841
epsF_1
MSHA biogenesis protein MshG; Derived by automated computational analysis using gene prediction method: Protein Homology.
 
  
 0.840
epsF_3
Type II secretion system protein GspF; Derived by automated computational analysis using gene prediction method: Protein Homology.
 
  
 0.832
pilQ
Fimbrial protein; Derived by automated computational analysis using gene prediction method: Protein Homology.
 
   
 0.789
yggS
YggS family pyridoxal phosphate enzyme; Pyridoxal 5'-phosphate (PLP)-binding protein, which is involved in PLP homeostasis; Belongs to the pyridoxal phosphate-binding protein YggS/PROSC family.
       0.727
AMG30399.1
Pilus assembly protein PilO; Derived by automated computational analysis using gene prediction method: Protein Homology.
 
  
 0.681
proC
Pyrroline-5-carboxylate reductase; Catalyzes the reduction of 1-pyrroline-5-carboxylate (PCA) to L-proline.
       0.662
AMG30175.1
Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology.
       0.659
Your Current Organism:
Grimontia hollisae
NCBI taxonomy Id: 673
Other names: ATCC 33564, CAIM 625, CCUG 13625, CDC 0075-80, CIP 101886, DSM 15132, G. hollisae, IMET 12291, LMG 17719, LMG:17719, NCTC 11640, Special Bacteriology group EF-13, Vibrio hollisae
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