Export your current network:
... as a vector graphic:
SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc
... as short tabular text output:
TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)
... as tabular text output:
TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)
... as an XML summary:
structured XML interaction data, according to the 'PSI-MI' data standard
... protein node degrees:
node degree of proteins in your network (given the current score cut-off)
... network coordinates:
a flat-file format describing the coordinates and colors of nodes in the network
... protein sequences:
MFA: multi-fasta format - containing the aminoacid sequences in the network
... protein annotations:
a tab-delimited file describing the names, domains and descriptions of proteins in your network
... functional annotations:
a tab-delimited file containing all known functional terms of proteins in your network
Browse interactions in tabular form:
| node1 | node2 | node1 accession | node2 accession | node1 annotation | node2 annotation | score |
| AMG30275.1 | lptA | AL542_07665 | AL542_07655 | RNA polymerase sigma-54 factor; Sigma factors are initiation factors that promote the attachment of RNA polymerase to specific initiation sites and are then released. | Lipopolysaccharide transport periplasmic protein LptA; Involved in the assembly of lipopolysaccharide (LPS). Required for the translocation of LPS from the inner membrane to the outer membrane. May form a bridge between the inner membrane and the outer membrane, via interactions with LptC and LptD, thereby facilitating LPS transfer across the periplasm. | 0.659 |
| AMG30275.1 | mgtE | AL542_07665 | AL542_07690 | RNA polymerase sigma-54 factor; Sigma factors are initiation factors that promote the attachment of RNA polymerase to specific initiation sites and are then released. | Magnesium transporter; Acts as a magnesium transporter. | 0.482 |
| AMG30275.1 | ptsN | AL542_07665 | AL542_07675 | RNA polymerase sigma-54 factor; Sigma factors are initiation factors that promote the attachment of RNA polymerase to specific initiation sites and are then released. | PTS sugar transporter; Derived by automated computational analysis using gene prediction method: Protein Homology. | 0.877 |
| AMG30275.1 | ptsO | AL542_07665 | AL542_07685 | RNA polymerase sigma-54 factor; Sigma factors are initiation factors that promote the attachment of RNA polymerase to specific initiation sites and are then released. | Phosphate ABC transporter permease; Derived by automated computational analysis using gene prediction method: Protein Homology. | 0.760 |
| AMG30275.1 | yhbH | AL542_07665 | AL542_07670 | RNA polymerase sigma-54 factor; Sigma factors are initiation factors that promote the attachment of RNA polymerase to specific initiation sites and are then released. | YhbH; resting ribosome-binding protein involved in ribosome stabilization and preservation in stationary phase; binds specifically 100S ribosomes (an inactive ribosome product of a 70S ribosome dimerization); seems to be involved in modulation of the sigma(54) (RpoN) activity for quorum sensing; Derived by automated computational analysis using gene prediction method: Protein Homology. | 0.811 |
| AMG30275.1 | yhbJ | AL542_07665 | AL542_07680 | RNA polymerase sigma-54 factor; Sigma factors are initiation factors that promote the attachment of RNA polymerase to specific initiation sites and are then released. | RNase adaptor protein RapZ; Displays ATPase and GTPase activities. | 0.737 |
| AMG30275.1 | yrbG | AL542_07665 | AL542_07635 | RNA polymerase sigma-54 factor; Sigma factors are initiation factors that promote the attachment of RNA polymerase to specific initiation sites and are then released. | Calcium:proton antiporter; YrbG; inner membrane protein involved in cell envelope integrity; putative sodium ion/calcium ion exchanger; in E. coli it is non essential for cell viability; member of the YRBG family of cation/Ca2+ exchangers; Derived by automated computational analysis using gene prediction method: Protein Homology. | 0.584 |
| AMG30281.1 | mgtE | AL542_07695 | AL542_07690 | Hypothetical protein; Derived by automated computational analysis using gene prediction method: GeneMarkS+. | Magnesium transporter; Acts as a magnesium transporter. | 0.434 |
| guaA | mgtE | AL542_05965 | AL542_07690 | GMP synthase; Catalyzes the synthesis of GMP from XMP. | Magnesium transporter; Acts as a magnesium transporter. | 0.406 |
| lptA | AMG30275.1 | AL542_07655 | AL542_07665 | Lipopolysaccharide transport periplasmic protein LptA; Involved in the assembly of lipopolysaccharide (LPS). Required for the translocation of LPS from the inner membrane to the outer membrane. May form a bridge between the inner membrane and the outer membrane, via interactions with LptC and LptD, thereby facilitating LPS transfer across the periplasm. | RNA polymerase sigma-54 factor; Sigma factors are initiation factors that promote the attachment of RNA polymerase to specific initiation sites and are then released. | 0.659 |
| lptA | mgtE | AL542_07655 | AL542_07690 | Lipopolysaccharide transport periplasmic protein LptA; Involved in the assembly of lipopolysaccharide (LPS). Required for the translocation of LPS from the inner membrane to the outer membrane. May form a bridge between the inner membrane and the outer membrane, via interactions with LptC and LptD, thereby facilitating LPS transfer across the periplasm. | Magnesium transporter; Acts as a magnesium transporter. | 0.466 |
| lptA | ptsN | AL542_07655 | AL542_07675 | Lipopolysaccharide transport periplasmic protein LptA; Involved in the assembly of lipopolysaccharide (LPS). Required for the translocation of LPS from the inner membrane to the outer membrane. May form a bridge between the inner membrane and the outer membrane, via interactions with LptC and LptD, thereby facilitating LPS transfer across the periplasm. | PTS sugar transporter; Derived by automated computational analysis using gene prediction method: Protein Homology. | 0.625 |
| lptA | ptsO | AL542_07655 | AL542_07685 | Lipopolysaccharide transport periplasmic protein LptA; Involved in the assembly of lipopolysaccharide (LPS). Required for the translocation of LPS from the inner membrane to the outer membrane. May form a bridge between the inner membrane and the outer membrane, via interactions with LptC and LptD, thereby facilitating LPS transfer across the periplasm. | Phosphate ABC transporter permease; Derived by automated computational analysis using gene prediction method: Protein Homology. | 0.613 |
| lptA | yhbH | AL542_07655 | AL542_07670 | Lipopolysaccharide transport periplasmic protein LptA; Involved in the assembly of lipopolysaccharide (LPS). Required for the translocation of LPS from the inner membrane to the outer membrane. May form a bridge between the inner membrane and the outer membrane, via interactions with LptC and LptD, thereby facilitating LPS transfer across the periplasm. | YhbH; resting ribosome-binding protein involved in ribosome stabilization and preservation in stationary phase; binds specifically 100S ribosomes (an inactive ribosome product of a 70S ribosome dimerization); seems to be involved in modulation of the sigma(54) (RpoN) activity for quorum sensing; Derived by automated computational analysis using gene prediction method: Protein Homology. | 0.577 |
| lptA | yhbJ | AL542_07655 | AL542_07680 | Lipopolysaccharide transport periplasmic protein LptA; Involved in the assembly of lipopolysaccharide (LPS). Required for the translocation of LPS from the inner membrane to the outer membrane. May form a bridge between the inner membrane and the outer membrane, via interactions with LptC and LptD, thereby facilitating LPS transfer across the periplasm. | RNase adaptor protein RapZ; Displays ATPase and GTPase activities. | 0.577 |
| lptA | yrbG | AL542_07655 | AL542_07635 | Lipopolysaccharide transport periplasmic protein LptA; Involved in the assembly of lipopolysaccharide (LPS). Required for the translocation of LPS from the inner membrane to the outer membrane. May form a bridge between the inner membrane and the outer membrane, via interactions with LptC and LptD, thereby facilitating LPS transfer across the periplasm. | Calcium:proton antiporter; YrbG; inner membrane protein involved in cell envelope integrity; putative sodium ion/calcium ion exchanger; in E. coli it is non essential for cell viability; member of the YRBG family of cation/Ca2+ exchangers; Derived by automated computational analysis using gene prediction method: Protein Homology. | 0.784 |
| mgtE | AMG30275.1 | AL542_07690 | AL542_07665 | Magnesium transporter; Acts as a magnesium transporter. | RNA polymerase sigma-54 factor; Sigma factors are initiation factors that promote the attachment of RNA polymerase to specific initiation sites and are then released. | 0.482 |
| mgtE | AMG30281.1 | AL542_07690 | AL542_07695 | Magnesium transporter; Acts as a magnesium transporter. | Hypothetical protein; Derived by automated computational analysis using gene prediction method: GeneMarkS+. | 0.434 |
| mgtE | guaA | AL542_07690 | AL542_05965 | Magnesium transporter; Acts as a magnesium transporter. | GMP synthase; Catalyzes the synthesis of GMP from XMP. | 0.406 |
| mgtE | lptA | AL542_07690 | AL542_07655 | Magnesium transporter; Acts as a magnesium transporter. | Lipopolysaccharide transport periplasmic protein LptA; Involved in the assembly of lipopolysaccharide (LPS). Required for the translocation of LPS from the inner membrane to the outer membrane. May form a bridge between the inner membrane and the outer membrane, via interactions with LptC and LptD, thereby facilitating LPS transfer across the periplasm. | 0.466 |
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