ramA protein (Grimontia hollisae) - STRING interaction network

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

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colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

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proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

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Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

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Your Current Organism:

Grimontia hollisae

NCBI taxonomy Id: 673
Other names: ATCC 33564, CAIM 625, CCUG 13625, CDC 0075-80, CIP 101886, DSM 15132, G. hollisae, IMET 12291, LMG 17719, LMG:17719, NCTC 11640, Special Bacteriology group EF-13, Vibrio hollisae

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structured XML interaction data, according to the 'PSI-MI' data standard

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a tab-delimited file describing the names, domains and descriptions of proteins in your network

... functional annotations:

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a tab-delimited file containing all known functional terms of proteins in your network

Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
AMG30293.1	csrD_1	AL542_07765	AL542_07840	Hypothetical protein; Derived by automated computational analysis using gene prediction method: GeneMarkS+.	Diguanylate phosphodiesterase; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.712
AMG30293.1	mreD	AL542_07765	AL542_07750	Hypothetical protein; Derived by automated computational analysis using gene prediction method: GeneMarkS+.	Rod shape-determining protein MreD; Involved in formation of the rod shape of the cell. May also contribute to regulation of formation of penicillin-binding proteins. Belongs to the MreD family.	0.656
AMG30293.1	ramA	AL542_07765	AL542_07730	Hypothetical protein; Derived by automated computational analysis using gene prediction method: GeneMarkS+.	Amidohydrolase; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.438
AMG30293.1	rng	AL542_07765	AL542_07740	Hypothetical protein; Derived by automated computational analysis using gene prediction method: GeneMarkS+.	Hypothetical protein; Frameshifted; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.651
cdr	ramA	AL542_02950	AL542_07730	CoA-disulfide reductase; Derived by automated computational analysis using gene prediction method: Protein Homology.	Amidohydrolase; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.473
csrD_1	AMG30293.1	AL542_07840	AL542_07765	Diguanylate phosphodiesterase; Derived by automated computational analysis using gene prediction method: Protein Homology.	Hypothetical protein; Derived by automated computational analysis using gene prediction method: GeneMarkS+.	0.712
csrD_1	mreD	AL542_07840	AL542_07750	Diguanylate phosphodiesterase; Derived by automated computational analysis using gene prediction method: Protein Homology.	Rod shape-determining protein MreD; Involved in formation of the rod shape of the cell. May also contribute to regulation of formation of penicillin-binding proteins. Belongs to the MreD family.	0.560
csrD_1	ramA	AL542_07840	AL542_07730	Diguanylate phosphodiesterase; Derived by automated computational analysis using gene prediction method: Protein Homology.	Amidohydrolase; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.415
csrD_1	rng	AL542_07840	AL542_07740	Diguanylate phosphodiesterase; Derived by automated computational analysis using gene prediction method: Protein Homology.	Hypothetical protein; Frameshifted; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.708
guaA	pstB-2	AL542_05965	AL542_04065	GMP synthase; Catalyzes the synthesis of GMP from XMP.	Phosphate ABC transporter ATP-binding protein; Part of the ABC transporter complex PstSACB involved in phosphate import. Responsible for energy coupling to the transport system; Belongs to the ABC transporter superfamily. Phosphate importer (TC 3.A.1.7) family.	0.568
guaA	pstB3_1	AL542_05965	AL542_06415	GMP synthase; Catalyzes the synthesis of GMP from XMP.	Phosphate ABC transporter ATP-binding protein; Part of the ABC transporter complex PstSACB involved in phosphate import. Responsible for energy coupling to the transport system; Belongs to the ABC transporter superfamily. Phosphate importer (TC 3.A.1.7) family.	0.568
guaA	ramA	AL542_05965	AL542_07730	GMP synthase; Catalyzes the synthesis of GMP from XMP.	Amidohydrolase; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.449
mreD	AMG30293.1	AL542_07750	AL542_07765	Rod shape-determining protein MreD; Involved in formation of the rod shape of the cell. May also contribute to regulation of formation of penicillin-binding proteins. Belongs to the MreD family.	Hypothetical protein; Derived by automated computational analysis using gene prediction method: GeneMarkS+.	0.656
mreD	csrD_1	AL542_07750	AL542_07840	Rod shape-determining protein MreD; Involved in formation of the rod shape of the cell. May also contribute to regulation of formation of penicillin-binding proteins. Belongs to the MreD family.	Diguanylate phosphodiesterase; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.560
mreD	ramA	AL542_07750	AL542_07730	Rod shape-determining protein MreD; Involved in formation of the rod shape of the cell. May also contribute to regulation of formation of penicillin-binding proteins. Belongs to the MreD family.	Amidohydrolase; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.431
mreD	rng	AL542_07750	AL542_07740	Rod shape-determining protein MreD; Involved in formation of the rod shape of the cell. May also contribute to regulation of formation of penicillin-binding proteins. Belongs to the MreD family.	Hypothetical protein; Frameshifted; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.842
npr	ramA	AL542_17550	AL542_07730	CoA-disulfide reductase; CoADR; specific for coenzyme A disulfide; requires NADH; involved in protecting cells against reactive oxygen species by recycling coenzyme A disulfide which can reduce hydrogen peroxide; Derived by automated computational analysis using gene prediction method: Protein Homology.	Amidohydrolase; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.458
pstB-2	guaA	AL542_04065	AL542_05965	Phosphate ABC transporter ATP-binding protein; Part of the ABC transporter complex PstSACB involved in phosphate import. Responsible for energy coupling to the transport system; Belongs to the ABC transporter superfamily. Phosphate importer (TC 3.A.1.7) family.	GMP synthase; Catalyzes the synthesis of GMP from XMP.	0.568
pstB-2	pstB3_1	AL542_04065	AL542_06415	Phosphate ABC transporter ATP-binding protein; Part of the ABC transporter complex PstSACB involved in phosphate import. Responsible for energy coupling to the transport system; Belongs to the ABC transporter superfamily. Phosphate importer (TC 3.A.1.7) family.	Phosphate ABC transporter ATP-binding protein; Part of the ABC transporter complex PstSACB involved in phosphate import. Responsible for energy coupling to the transport system; Belongs to the ABC transporter superfamily. Phosphate importer (TC 3.A.1.7) family.	0.904
pstB-2	ramA	AL542_04065	AL542_07730	Phosphate ABC transporter ATP-binding protein; Part of the ABC transporter complex PstSACB involved in phosphate import. Responsible for energy coupling to the transport system; Belongs to the ABC transporter superfamily. Phosphate importer (TC 3.A.1.7) family.	Amidohydrolase; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.451

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