Export your current network:
... as a vector graphic:
SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc
... as short tabular text output:
TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)
... as tabular text output:
TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)
... as an XML summary:
structured XML interaction data, according to the 'PSI-MI' data standard
... protein node degrees:
node degree of proteins in your network (given the current score cut-off)
... network coordinates:
a flat-file format describing the coordinates and colors of nodes in the network
... protein sequences:
MFA: multi-fasta format - containing the aminoacid sequences in the network
... protein annotations:
a tab-delimited file describing the names, domains and descriptions of proteins in your network
... functional annotations:
a tab-delimited file containing all known functional terms of proteins in your network
Browse interactions in tabular form:
| node1 | node2 | node1 accession | node2 accession | node1 annotation | node2 annotation | score |
| AMG31116.1 | AMG31117.1 | AL542_12660 | AL542_12665 | Sterol-binding protein; Derived by automated computational analysis using gene prediction method: Protein Homology. | Acetyltransferase; Derived by automated computational analysis using gene prediction method: Protein Homology. | 0.865 |
| AMG31116.1 | RimI | AL542_12660 | AL542_12675 | Sterol-binding protein; Derived by automated computational analysis using gene prediction method: Protein Homology. | Ribosomal-protein-alanine acetyltransferase; Acetylates the N-terminal alanine of ribosomal protein S18. | 0.569 |
| AMG31116.1 | gmr_1 | AL542_12660 | AL542_12655 | Sterol-binding protein; Derived by automated computational analysis using gene prediction method: Protein Homology. | c-di-GMP phosphodiesterase; Derived by automated computational analysis using gene prediction method: Protein Homology. | 0.544 |
| AMG31116.1 | holD | AL542_12660 | AL542_12670 | Sterol-binding protein; Derived by automated computational analysis using gene prediction method: Protein Homology. | DNA polymerase III subunit psi; DNA polymerase III is a complex, multichain enzyme responsible for most of the replicative synthesis in bacteria. This DNA polymerase also exhibits 3' to 5' exonuclease activity. The exact function of the psi subunit is unknown. | 0.637 |
| AMG31116.1 | yhbU_2 | AL542_12660 | AL542_12650 | Sterol-binding protein; Derived by automated computational analysis using gene prediction method: Protein Homology. | U32 family peptidase; Frameshifted; Derived by automated computational analysis using gene prediction method: Protein Homology. | 0.909 |
| AMG31117.1 | AMG31116.1 | AL542_12665 | AL542_12660 | Acetyltransferase; Derived by automated computational analysis using gene prediction method: Protein Homology. | Sterol-binding protein; Derived by automated computational analysis using gene prediction method: Protein Homology. | 0.865 |
| AMG31117.1 | RimI | AL542_12665 | AL542_12675 | Acetyltransferase; Derived by automated computational analysis using gene prediction method: Protein Homology. | Ribosomal-protein-alanine acetyltransferase; Acetylates the N-terminal alanine of ribosomal protein S18. | 0.647 |
| AMG31117.1 | gmr_1 | AL542_12665 | AL542_12655 | Acetyltransferase; Derived by automated computational analysis using gene prediction method: Protein Homology. | c-di-GMP phosphodiesterase; Derived by automated computational analysis using gene prediction method: Protein Homology. | 0.544 |
| AMG31117.1 | holD | AL542_12665 | AL542_12670 | Acetyltransferase; Derived by automated computational analysis using gene prediction method: Protein Homology. | DNA polymerase III subunit psi; DNA polymerase III is a complex, multichain enzyme responsible for most of the replicative synthesis in bacteria. This DNA polymerase also exhibits 3' to 5' exonuclease activity. The exact function of the psi subunit is unknown. | 0.625 |
| AMG31117.1 | yhbU_2 | AL542_12665 | AL542_12650 | Acetyltransferase; Derived by automated computational analysis using gene prediction method: Protein Homology. | U32 family peptidase; Frameshifted; Derived by automated computational analysis using gene prediction method: Protein Homology. | 0.402 |
| RimI | AMG31116.1 | AL542_12675 | AL542_12660 | Ribosomal-protein-alanine acetyltransferase; Acetylates the N-terminal alanine of ribosomal protein S18. | Sterol-binding protein; Derived by automated computational analysis using gene prediction method: Protein Homology. | 0.569 |
| RimI | AMG31117.1 | AL542_12675 | AL542_12665 | Ribosomal-protein-alanine acetyltransferase; Acetylates the N-terminal alanine of ribosomal protein S18. | Acetyltransferase; Derived by automated computational analysis using gene prediction method: Protein Homology. | 0.647 |
| RimI | gmr_1 | AL542_12675 | AL542_12655 | Ribosomal-protein-alanine acetyltransferase; Acetylates the N-terminal alanine of ribosomal protein S18. | c-di-GMP phosphodiesterase; Derived by automated computational analysis using gene prediction method: Protein Homology. | 0.408 |
| RimI | holD | AL542_12675 | AL542_12670 | Ribosomal-protein-alanine acetyltransferase; Acetylates the N-terminal alanine of ribosomal protein S18. | DNA polymerase III subunit psi; DNA polymerase III is a complex, multichain enzyme responsible for most of the replicative synthesis in bacteria. This DNA polymerase also exhibits 3' to 5' exonuclease activity. The exact function of the psi subunit is unknown. | 0.827 |
| gmr_1 | AMG31116.1 | AL542_12655 | AL542_12660 | c-di-GMP phosphodiesterase; Derived by automated computational analysis using gene prediction method: Protein Homology. | Sterol-binding protein; Derived by automated computational analysis using gene prediction method: Protein Homology. | 0.544 |
| gmr_1 | AMG31117.1 | AL542_12655 | AL542_12665 | c-di-GMP phosphodiesterase; Derived by automated computational analysis using gene prediction method: Protein Homology. | Acetyltransferase; Derived by automated computational analysis using gene prediction method: Protein Homology. | 0.544 |
| gmr_1 | RimI | AL542_12655 | AL542_12675 | c-di-GMP phosphodiesterase; Derived by automated computational analysis using gene prediction method: Protein Homology. | Ribosomal-protein-alanine acetyltransferase; Acetylates the N-terminal alanine of ribosomal protein S18. | 0.408 |
| gmr_1 | holD | AL542_12655 | AL542_12670 | c-di-GMP phosphodiesterase; Derived by automated computational analysis using gene prediction method: Protein Homology. | DNA polymerase III subunit psi; DNA polymerase III is a complex, multichain enzyme responsible for most of the replicative synthesis in bacteria. This DNA polymerase also exhibits 3' to 5' exonuclease activity. The exact function of the psi subunit is unknown. | 0.407 |
| gmr_1 | yhbU_2 | AL542_12655 | AL542_12650 | c-di-GMP phosphodiesterase; Derived by automated computational analysis using gene prediction method: Protein Homology. | U32 family peptidase; Frameshifted; Derived by automated computational analysis using gene prediction method: Protein Homology. | 0.522 |
| holD | AMG31116.1 | AL542_12670 | AL542_12660 | DNA polymerase III subunit psi; DNA polymerase III is a complex, multichain enzyme responsible for most of the replicative synthesis in bacteria. This DNA polymerase also exhibits 3' to 5' exonuclease activity. The exact function of the psi subunit is unknown. | Sterol-binding protein; Derived by automated computational analysis using gene prediction method: Protein Homology. | 0.637 |
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