Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
AMG31166.1Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology. (674 aa)    
Predicted Functional Partners:
AMG31167.1
Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology.
     0.994
DndD
DNA sulfur modification protein DndD; Derived by automated computational analysis using gene prediction method: Protein Homology.
 
  
 0.873
AMG31164.1
Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology.
 
     0.869
DndB
DNA sulfur modification protein DndB; Derived by automated computational analysis using gene prediction method: Protein Homology.
 
     0.857
rpsE
30S ribosomal protein S5; Located at the back of the 30S subunit body where it stabilizes the conformation of the head with respect to the body. Belongs to the universal ribosomal protein uS5 family.
    
 0.828
AMG30370.1
Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology.
  
 0.817
AMG30319.1
Capsular biosynthesis protein; Derived by automated computational analysis using gene prediction method: Protein Homology.
 
 
 
 0.758
DptH
DNA phosphorothioation-dependent restriction protein DptH; Derived by automated computational analysis using gene prediction method: Protein Homology.
 
     0.747
AMG31907.1
ATP-dependent helicase; Derived by automated computational analysis using gene prediction method: Protein Homology.
  
 0.745
DptF
DNA phosphorothioation-dependent restriction protein DptF; Derived by automated computational analysis using gene prediction method: Protein Homology.
  
     0.734
Your Current Organism:
Grimontia hollisae
NCBI taxonomy Id: 673
Other names: ATCC 33564, CAIM 625, CCUG 13625, CDC 0075-80, CIP 101886, DSM 15132, G. hollisae, IMET 12291, LMG 17719, LMG:17719, NCTC 11640, Special Bacteriology group EF-13, Vibrio hollisae
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