Export your current network:
... as a vector graphic:
SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc
... as short tabular text output:
TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)
... as tabular text output:
TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)
... as an XML summary:
structured XML interaction data, according to the 'PSI-MI' data standard
... protein node degrees:
node degree of proteins in your network (given the current score cut-off)
... network coordinates:
a flat-file format describing the coordinates and colors of nodes in the network
... protein sequences:
MFA: multi-fasta format - containing the aminoacid sequences in the network
... protein annotations:
a tab-delimited file describing the names, domains and descriptions of proteins in your network
... functional annotations:
a tab-delimited file containing all known functional terms of proteins in your network
Browse interactions in tabular form:
| node1 | node2 | node1 accession | node2 accession | node1 annotation | node2 annotation | score |
| AMG30293.1 | prc | AL542_07765 | AL542_17035 | Hypothetical protein; Derived by automated computational analysis using gene prediction method: GeneMarkS+. | Carboxy-terminal protease; Involved in the cleavage of a C-terminal peptide of 11 residues from the precursor form of penicillin-binding protein 3; Derived by automated computational analysis using gene prediction method: Protein Homology. | 0.718 |
| AMG31876.1 | msrC | AL542_17030 | AL542_17045 | Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology. | GAF domain-containing protein; Derived by automated computational analysis using gene prediction method: Protein Homology. | 0.401 |
| AMG31876.1 | prc | AL542_17030 | AL542_17035 | Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology. | Carboxy-terminal protease; Involved in the cleavage of a C-terminal peptide of 11 residues from the precursor form of penicillin-binding protein 3; Derived by automated computational analysis using gene prediction method: Protein Homology. | 0.535 |
| AMG31876.1 | proQ | AL542_17030 | AL542_17040 | Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology. | RNA chaperone ProQ; RNA chaperone with significant RNA binding, RNA strand exchange and RNA duplexing activities; Belongs to the ProQ family. | 0.516 |
| AMG32065.1 | prc | AL542_18150 | AL542_17035 | Hypothetical protein; Derived by automated computational analysis using gene prediction method: GeneMarkS+. | Carboxy-terminal protease; Involved in the cleavage of a C-terminal peptide of 11 residues from the precursor form of penicillin-binding protein 3; Derived by automated computational analysis using gene prediction method: Protein Homology. | 0.718 |
| envC | prc | AL542_08625 | AL542_17035 | Peptidase M23; Derived by automated computational analysis using gene prediction method: Protein Homology. | Carboxy-terminal protease; Involved in the cleavage of a C-terminal peptide of 11 residues from the precursor form of penicillin-binding protein 3; Derived by automated computational analysis using gene prediction method: Protein Homology. | 0.654 |
| msrC | AMG31876.1 | AL542_17045 | AL542_17030 | GAF domain-containing protein; Derived by automated computational analysis using gene prediction method: Protein Homology. | Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology. | 0.401 |
| msrC | prc | AL542_17045 | AL542_17035 | GAF domain-containing protein; Derived by automated computational analysis using gene prediction method: Protein Homology. | Carboxy-terminal protease; Involved in the cleavage of a C-terminal peptide of 11 residues from the precursor form of penicillin-binding protein 3; Derived by automated computational analysis using gene prediction method: Protein Homology. | 0.615 |
| msrC | proQ | AL542_17045 | AL542_17040 | GAF domain-containing protein; Derived by automated computational analysis using gene prediction method: Protein Homology. | RNA chaperone ProQ; RNA chaperone with significant RNA binding, RNA strand exchange and RNA duplexing activities; Belongs to the ProQ family. | 0.714 |
| nfuA | prc | AL542_09080 | AL542_17035 | Fe/S biogenesis protein NfuA; Involved in iron-sulfur cluster biogenesis. Binds a 4Fe-4S cluster, can transfer this cluster to apoproteins, and thereby intervenes in the maturation of Fe/S proteins. Could also act as a scaffold/chaperone for damaged Fe/S proteins. | Carboxy-terminal protease; Involved in the cleavage of a C-terminal peptide of 11 residues from the precursor form of penicillin-binding protein 3; Derived by automated computational analysis using gene prediction method: Protein Homology. | 0.438 |
| nlpI | prc | AL542_12640 | AL542_17035 | Lipoprotein NlpI; May be involved in cell division. | Carboxy-terminal protease; Involved in the cleavage of a C-terminal peptide of 11 residues from the precursor form of penicillin-binding protein 3; Derived by automated computational analysis using gene prediction method: Protein Homology. | 0.874 |
| nlpI | proQ | AL542_12640 | AL542_17040 | Lipoprotein NlpI; May be involved in cell division. | RNA chaperone ProQ; RNA chaperone with significant RNA binding, RNA strand exchange and RNA duplexing activities; Belongs to the ProQ family. | 0.799 |
| pheT | prc | AL542_17265 | AL542_17035 | phenylalanine--tRNA ligase subunit beta; Catalyzes a two-step reaction, first charging a phenylalanine molecule by linking its carboxyl group to the alpha-phosphate of ATP, followed by transfer of the aminoacyl-adenylate to its tRNA; forms a tetramer of alpha(2)beta(2); binds two magnesium ions per tetramer; type 2 subfamily; Derived by automated computational analysis using gene prediction method: Protein Homology; Belongs to the phenylalanyl-tRNA synthetase beta subunit family. Type 1 subfamily. | Carboxy-terminal protease; Involved in the cleavage of a C-terminal peptide of 11 residues from the precursor form of penicillin-binding protein 3; Derived by automated computational analysis using gene prediction method: Protein Homology. | 0.511 |
| prc | AMG30293.1 | AL542_17035 | AL542_07765 | Carboxy-terminal protease; Involved in the cleavage of a C-terminal peptide of 11 residues from the precursor form of penicillin-binding protein 3; Derived by automated computational analysis using gene prediction method: Protein Homology. | Hypothetical protein; Derived by automated computational analysis using gene prediction method: GeneMarkS+. | 0.718 |
| prc | AMG31876.1 | AL542_17035 | AL542_17030 | Carboxy-terminal protease; Involved in the cleavage of a C-terminal peptide of 11 residues from the precursor form of penicillin-binding protein 3; Derived by automated computational analysis using gene prediction method: Protein Homology. | Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology. | 0.535 |
| prc | AMG32065.1 | AL542_17035 | AL542_18150 | Carboxy-terminal protease; Involved in the cleavage of a C-terminal peptide of 11 residues from the precursor form of penicillin-binding protein 3; Derived by automated computational analysis using gene prediction method: Protein Homology. | Hypothetical protein; Derived by automated computational analysis using gene prediction method: GeneMarkS+. | 0.718 |
| prc | envC | AL542_17035 | AL542_08625 | Carboxy-terminal protease; Involved in the cleavage of a C-terminal peptide of 11 residues from the precursor form of penicillin-binding protein 3; Derived by automated computational analysis using gene prediction method: Protein Homology. | Peptidase M23; Derived by automated computational analysis using gene prediction method: Protein Homology. | 0.654 |
| prc | msrC | AL542_17035 | AL542_17045 | Carboxy-terminal protease; Involved in the cleavage of a C-terminal peptide of 11 residues from the precursor form of penicillin-binding protein 3; Derived by automated computational analysis using gene prediction method: Protein Homology. | GAF domain-containing protein; Derived by automated computational analysis using gene prediction method: Protein Homology. | 0.615 |
| prc | nfuA | AL542_17035 | AL542_09080 | Carboxy-terminal protease; Involved in the cleavage of a C-terminal peptide of 11 residues from the precursor form of penicillin-binding protein 3; Derived by automated computational analysis using gene prediction method: Protein Homology. | Fe/S biogenesis protein NfuA; Involved in iron-sulfur cluster biogenesis. Binds a 4Fe-4S cluster, can transfer this cluster to apoproteins, and thereby intervenes in the maturation of Fe/S proteins. Could also act as a scaffold/chaperone for damaged Fe/S proteins. | 0.438 |
| prc | nlpI | AL542_17035 | AL542_12640 | Carboxy-terminal protease; Involved in the cleavage of a C-terminal peptide of 11 residues from the precursor form of penicillin-binding protein 3; Derived by automated computational analysis using gene prediction method: Protein Homology. | Lipoprotein NlpI; May be involved in cell division. | 0.874 |
page 1 of 2