ku protein (Streptomyces griseorubiginosus) - STRING interaction network

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[Homology]

Score

ku

DNA repair protein; With LigD forms a non-homologous end joining (NHEJ) DNA repair enzyme, which repairs dsDNA breaks with reduced fidelity. Binds linear dsDNA with 5'- and 3'- overhangs but not closed circular dsDNA nor ssDNA. Recruits and stimulates the ligase activity of LigD. Belongs to the prokaryotic Ku family. (351 aa)

Predicted Functional Partners:

LigD_3

0.986

LigC

0.923

LigD_4

0.902

LigD_1

0.897

ligB

0.891

LigD_5

0.886

LigD_2

0.881

Your Current Organism:

Streptomyces griseorubiginosus

NCBI taxonomy Id: 67304
Other names: ATCC 23627, ATCC 23946 [[Streptomyces phaeopurpureus]], ATCC 23947 [[Streptomyces phaeoviridis]], ATCC 25459, Actinomyces griseorubiginosus, BCRC 12124, BCRC 13754 [[Streptomyces phaeopurpureus]], CBS 692.69, CBS 930.68 [[Streptomyces phaeopurpureus]], CCRC 12124, CCRC 13754 [[Streptomyces phaeopurpureus]], CCRC:12124, CCRC:13754 [[Streptomyces phaeopurpureus]], DSM 40125 [[Streptomyces phaeopurpureus]], DSM 40469, HAMBI 950 [[Streptomyces phaeopurpureus]], IFO 12899 [[Streptomyces phaeopurpureus]], IFO 12900 [[Streptomyces phaeoviridis]], IFO 13047, IFO 3930 [[Streptomyces phaeopurpureus]], INA 7712, ISP 5125 [[Streptomyces phaeopurpureus]], ISP 5469, JCM 4101 [[Streptomyces phaeopurpureus]], JCM 4481, JCM 4660 [[Streptomyces phaeopurpureus]], JCM 4661 [[Streptomyces phaeoviridis]], KCTC 9764 [[Streptomyces phaeopurpureus]], LMG 19941, LMG:19941, NBRC 12899 [[Streptomyces phaeopurpureus]], NBRC 12900 [[Streptomyces phaeoviridis]], NBRC 13047, NBRC 3930 [[Streptomyces phaeopurpureus]], NCIMB 9832 [[Streptomyces phaeoviridis]], NRRL B-12384, NRRL B-2258 [[Streptomyces phaeoviridis]], NRRL B-2260 [[Streptomyces phaeopurpureus]], NRRL-ISP 5125 [[Streptomyces phaeopurpureus]], NRRL-ISP 5469, NRRL:B:2258 [[Streptomyces phaeoviridis]], S. griseorubiginosus, Streptomyces griseirubiginosus, Streptomyces phaeopurpureus, Streptomyces phaeoviridis

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Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
LigC	LigD_1	AQJ54_14450	AQJ54_14445	ATP-dependent DNA ligase; Derived by automated computational analysis using gene prediction method: Protein Homology.	ATP-dependent DNA ligase; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.995
LigC	LigD_2	AQJ54_14450	AQJ54_15555	ATP-dependent DNA ligase; Derived by automated computational analysis using gene prediction method: Protein Homology.	ATP-dependent DNA ligase; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.980
LigC	LigD_3	AQJ54_14450	AQJ54_04335	ATP-dependent DNA ligase; Derived by automated computational analysis using gene prediction method: Protein Homology.	ATP-dependent DNA ligase; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.983
LigC	LigD_5	AQJ54_14450	AQJ54_28765	ATP-dependent DNA ligase; Derived by automated computational analysis using gene prediction method: Protein Homology.	3'-phosphoesterase; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.967
LigC	ku	AQJ54_14450	AQJ54_04340	ATP-dependent DNA ligase; Derived by automated computational analysis using gene prediction method: Protein Homology.	DNA repair protein; With LigD forms a non-homologous end joining (NHEJ) DNA repair enzyme, which repairs dsDNA breaks with reduced fidelity. Binds linear dsDNA with 5'- and 3'- overhangs but not closed circular dsDNA nor ssDNA. Recruits and stimulates the ligase activity of LigD. Belongs to the prokaryotic Ku family.	0.923
LigC	ligB	AQJ54_14450	AQJ54_24910	ATP-dependent DNA ligase; Derived by automated computational analysis using gene prediction method: Protein Homology.	ATP-dependent DNA ligase; DNA ligase that seals nicks in double-stranded DNA during DNA replication, DNA recombination and DNA repair.	0.674
LigD_1	LigC	AQJ54_14445	AQJ54_14450	ATP-dependent DNA ligase; Derived by automated computational analysis using gene prediction method: Protein Homology.	ATP-dependent DNA ligase; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.995
LigD_1	LigD_4	AQJ54_14445	AQJ54_28825	ATP-dependent DNA ligase; Derived by automated computational analysis using gene prediction method: Protein Homology.	ATP-dependent DNA ligase; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.979
LigD_1	LigD_5	AQJ54_14445	AQJ54_28765	ATP-dependent DNA ligase; Derived by automated computational analysis using gene prediction method: Protein Homology.	3'-phosphoesterase; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.978
LigD_1	ku	AQJ54_14445	AQJ54_04340	ATP-dependent DNA ligase; Derived by automated computational analysis using gene prediction method: Protein Homology.	DNA repair protein; With LigD forms a non-homologous end joining (NHEJ) DNA repair enzyme, which repairs dsDNA breaks with reduced fidelity. Binds linear dsDNA with 5'- and 3'- overhangs but not closed circular dsDNA nor ssDNA. Recruits and stimulates the ligase activity of LigD. Belongs to the prokaryotic Ku family.	0.897
LigD_1	ligB	AQJ54_14445	AQJ54_24910	ATP-dependent DNA ligase; Derived by automated computational analysis using gene prediction method: Protein Homology.	ATP-dependent DNA ligase; DNA ligase that seals nicks in double-stranded DNA during DNA replication, DNA recombination and DNA repair.	0.845
LigD_2	LigC	AQJ54_15555	AQJ54_14450	ATP-dependent DNA ligase; Derived by automated computational analysis using gene prediction method: Protein Homology.	ATP-dependent DNA ligase; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.980
LigD_2	LigD_3	AQJ54_15555	AQJ54_04335	ATP-dependent DNA ligase; Derived by automated computational analysis using gene prediction method: Protein Homology.	ATP-dependent DNA ligase; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.925
LigD_2	LigD_4	AQJ54_15555	AQJ54_28825	ATP-dependent DNA ligase; Derived by automated computational analysis using gene prediction method: Protein Homology.	ATP-dependent DNA ligase; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.998
LigD_2	LigD_5	AQJ54_15555	AQJ54_28765	ATP-dependent DNA ligase; Derived by automated computational analysis using gene prediction method: Protein Homology.	3'-phosphoesterase; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.981
LigD_2	ku	AQJ54_15555	AQJ54_04340	ATP-dependent DNA ligase; Derived by automated computational analysis using gene prediction method: Protein Homology.	DNA repair protein; With LigD forms a non-homologous end joining (NHEJ) DNA repair enzyme, which repairs dsDNA breaks with reduced fidelity. Binds linear dsDNA with 5'- and 3'- overhangs but not closed circular dsDNA nor ssDNA. Recruits and stimulates the ligase activity of LigD. Belongs to the prokaryotic Ku family.	0.881
LigD_2	ligB	AQJ54_15555	AQJ54_24910	ATP-dependent DNA ligase; Derived by automated computational analysis using gene prediction method: Protein Homology.	ATP-dependent DNA ligase; DNA ligase that seals nicks in double-stranded DNA during DNA replication, DNA recombination and DNA repair.	0.747
LigD_3	LigC	AQJ54_04335	AQJ54_14450	ATP-dependent DNA ligase; Derived by automated computational analysis using gene prediction method: Protein Homology.	ATP-dependent DNA ligase; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.983
LigD_3	LigD_2	AQJ54_04335	AQJ54_15555	ATP-dependent DNA ligase; Derived by automated computational analysis using gene prediction method: Protein Homology.	ATP-dependent DNA ligase; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.925
LigD_3	LigD_4	AQJ54_04335	AQJ54_28825	ATP-dependent DNA ligase; Derived by automated computational analysis using gene prediction method: Protein Homology.	ATP-dependent DNA ligase; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.999

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