STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
GCA_000718625_00104Unannotated protein. (384 aa)    
Predicted Functional Partners:
GCA_000718625_01915
Unannotated protein.
    
 0.894
GCA_000718625_07300
Unannotated protein.
  
  
  0.840
GCA_000718625_03197
Unannotated protein.
  
 0.742
GCA_000718625_00109
Unannotated protein.
       0.689
GCA_000718625_03198
Unannotated protein.
   
 0.671
GCA_000718625_03199
Unannotated protein.
   
 0.671
GCA_000718625_02078
Unannotated protein.
 
  
 0.650
GCA_000718625_01739
Unannotated protein.
  
  
 0.632
GCA_000718625_00105
Unannotated protein.
       0.612
GCA_000718625_00106
Unannotated protein.
       0.598
Your Current Organism:
Streptomyces lavenduligriseus
NCBI taxonomy Id: 67315
Other names: ATCC 13306, ATCC 29661, CBS 706.72, DSM 40487, IFO 13405, ISP 5487, JCM 4545, JCM 4779, NBRC 13405, NRRL B-3173, NRRL-ISP 5487, S. lavenduligriseus, Streptoverticillium lavenduligriseum
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.