STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
GCA_000718625_01679Unannotated protein. (254 aa)    
Predicted Functional Partners:
GCA_000718625_01678
Unannotated protein.
 
     0.928
GCA_000718625_01680
Unannotated protein.
 
     0.890
GCA_000718625_04031
Unannotated protein.
  
     0.773
GCA_000718625_01676
Unannotated protein.
       0.758
GCA_000718625_01677
Unannotated protein.
       0.758
GCA_000718625_03143
Unannotated protein.
  
     0.736
GCA_000718625_04487
Unannotated protein.
  
     0.729
GCA_000718625_01681
Unannotated protein.
       0.588
GCA_000718625_06984
Unannotated protein.
  
    0.587
GCA_000718625_06983
Unannotated protein.
  
    0.571
Your Current Organism:
Streptomyces lavenduligriseus
NCBI taxonomy Id: 67315
Other names: ATCC 13306, ATCC 29661, CBS 706.72, DSM 40487, IFO 13405, ISP 5487, JCM 4545, JCM 4779, NBRC 13405, NRRL B-3173, NRRL-ISP 5487, S. lavenduligriseus, Streptoverticillium lavenduligriseum
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.