Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
SEB31452.1Transposase. (533 aa)    
Predicted Functional Partners:
SEB31459.1
DNA replication protein DnaC.
 
 
 0.964
SEC20780.1
DNA replication protein DnaC.
 
 
 0.852
SED78137.1
IstB-like ATP binding protein.
 
 
 0.693
SEC04431.1
Phage major capsid protein, HK97 family.
  
     0.689
SEB82901.1
Hypothetical protein.
  
     0.490
SEC04336.1
Phage portal protein, HK97 family.
  
     0.453
SEC04938.1
Hypothetical protein.
  
  
 0.419
SED83463.1
GDSL-like Lipase/Acylhydrolase family protein.
  
     0.402
Your Current Organism:
Streptomyces misionensis
NCBI taxonomy Id: 67331
Other names: ATCC 14991, ATCC 25475, BCRC 12094, CBS 885.69, CCRC 12094, CCRC:12094, DSM 40306, IFO 13063, ISP 5306, JCM 4497, NBRC 13063, NRRL B-3230, NRRL-ISP 5306, S. misionensis, Streptomyces misionesensis, VKM Ac-626
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