Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
SEB76657.1Helix-turn-helix domain-containing protein. (332 aa)    
Predicted Functional Partners:
SEB76693.1
Predicted arabinose efflux permease, MFS family.
 
     0.840
SED03609.1
Predicted arabinose efflux permease, MFS family.
  
     0.616
SED68633.1
Hypothetical protein.
  
     0.492
SED58148.1
Conserved protein containing a Zn-ribbon-like motif, possibly RNA-binding.
  
     0.450
SED20062.1
ABC-2 type transport system permease protein.
  
     0.445
SED19995.1
ABC-2 type transport system permease protein.
  
     0.431
SED86091.1
Sugar-specific transcriptional regulator TrmB.
  
   
 0.414
SEC33662.1
Helix-turn-helix domain-containing protein; Manually curated.
  
    0.408
SED14421.1
Hypothetical protein.
  
     0.408
SED27996.1
CO dehydrogenase maturation factor.
  
     0.408
Your Current Organism:
Streptomyces misionensis
NCBI taxonomy Id: 67331
Other names: ATCC 14991, ATCC 25475, BCRC 12094, CBS 885.69, CCRC 12094, CCRC:12094, DSM 40306, IFO 13063, ISP 5306, JCM 4497, NBRC 13063, NRRL B-3230, NRRL-ISP 5306, S. misionensis, Streptomyces misionesensis, VKM Ac-626
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