STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
SEB89831.1Acetoacetate decarboxylase. (270 aa)    
Predicted Functional Partners:
SEB89907.1
Ferredoxin.
 
     0.937
SEB89753.1
Aromatic ring-opening dioxygenase, catalytic subunit, LigB family.
 
     0.916
SEB89717.1
5-oxopent-3-ene-1,2,5-tricarboxylate decarboxylase / 2-hydroxyhepta-2,4-diene-1,7-dioate isomerase.
 
     0.887
SEB89944.1
Glutamine synthetase.
 
     0.864
SEB89868.1
Reductase C-terminal.
 
     0.853
SEE02658.1
3-oxoacid CoA-transferase subunit A.
    
 0.814
SEE28554.1
3-oxoacid CoA-transferase subunit A.
    
 0.814
SEB89986.1
Cytochrome P450.
 
     0.807
SEE02629.1
3-oxoacid CoA-transferase subunit B.
    
 0.800
SEE28516.1
3-oxoacid CoA-transferase subunit B.
    
 0.800
Your Current Organism:
Streptomyces misionensis
NCBI taxonomy Id: 67331
Other names: ATCC 14991, ATCC 25475, BCRC 12094, CBS 885.69, CCRC 12094, CCRC:12094, DSM 40306, IFO 13063, ISP 5306, JCM 4497, NBRC 13063, NRRL B-3230, NRRL-ISP 5306, S. misionensis, Streptomyces misionesensis, VKM Ac-626
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