Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
SEC28040.1Hypothetical protein. (431 aa)    
Predicted Functional Partners:
SEC28117.1
WD40-like Beta Propeller Repeat.
 
  
  0.890
SEE07514.1
Fibronectin type III domain-containing protein.
  
  
  0.867
SEC28162.1
Protein of unknown function.
 
   
 0.854
SEC28335.1
Hypothetical protein.
 
   
 0.828
SEC28071.1
DNA-binding response regulator, NarL/FixJ family, contains REC and HTH domains.
 
     0.824
SEC28745.1
Phage tail protein domain-containing protein.
 
   
 0.818
SEC28289.1
Conserved hypothetical phage tail region protein.
 
     0.810
SEC28247.1
Hypothetical protein.
 
   
 0.808
SEC28473.1
Conserved hypothetical phage tail region protein.
 
     0.806
SEC28701.1
Putative baseplate assembly protein.
 
     0.806
Your Current Organism:
Streptomyces misionensis
NCBI taxonomy Id: 67331
Other names: ATCC 14991, ATCC 25475, BCRC 12094, CBS 885.69, CCRC 12094, CCRC:12094, DSM 40306, IFO 13063, ISP 5306, JCM 4497, NBRC 13063, NRRL B-3230, NRRL-ISP 5306, S. misionensis, Streptomyces misionesensis, VKM Ac-626
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