STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
SEC28788.1Hypothetical protein. (254 aa)    
Predicted Functional Partners:
SED58511.1
2-oxoglutarate dehydrogenase E1 component.
    
 
 0.999
SEC65396.1
Serine/threonine protein kinase.
   
 
 0.949
SED15536.1
Serine/threonine protein kinase.
   
 
 0.949
SED15568.1
Serine/threonine protein kinase.
   
 
 0.949
SED16722.1
Serine/threonine protein kinase.
   
 
 0.949
SED73752.1
Signal transduction histidine kinase.
  
 
 0.860
SEC61955.1
Glutamate synthase (NADH) large subunit.
    
   0.740
SEC95252.1
Glutamate dehydrogenase (NAD).
    
   0.725
ribBA
GTP cyclohydrolase II /3,4-dihydroxy-2-butanone 4-phosphate synthase; Catalyzes the conversion of D-ribulose 5-phosphate to formate and 3,4-dihydroxy-2-butanone 4-phosphate; In the C-terminal section; belongs to the GTP cyclohydrolase II family.
    
 0.690
SED20534.1
Serine phosphatase RsbU, regulator of sigma subunit.
  
 
  0.668
Your Current Organism:
Streptomyces misionensis
NCBI taxonomy Id: 67331
Other names: ATCC 14991, ATCC 25475, BCRC 12094, CBS 885.69, CCRC 12094, CCRC:12094, DSM 40306, IFO 13063, ISP 5306, JCM 4497, NBRC 13063, NRRL B-3230, NRRL-ISP 5306, S. misionensis, Streptomyces misionesensis, VKM Ac-626
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