STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
SEC43463.1Regulatory protein, tetR family. (190 aa)    
Predicted Functional Partners:
SEC43422.1
MFS transporter, DHA2 family, multidrug resistance protein.
 
     0.831
SEC43499.1
Predicted oxidoreductase.
       0.783
SEC43714.1
Pyridoxamine 5'-phosphate oxidase.
 
     0.646
argH
Argininosuccinate lyase.
   
   0.616
argG
Argininosuccinate synthase; Belongs to the argininosuccinate synthase family. Type 1 subfamily.
       0.584
SEC00644.1
Hypothetical protein.
  
     0.528
SED74400.1
Cysteine dioxygenase type I.
  
     0.503
SED66841.1
Regulatory protein, luxR family.
  
     0.486
SED91619.1
Gas vesicle protein G.
  
     0.469
SED67234.1
DNA-binding transcriptional regulator, AcrR family.
  
     0.464
Your Current Organism:
Streptomyces misionensis
NCBI taxonomy Id: 67331
Other names: ATCC 14991, ATCC 25475, BCRC 12094, CBS 885.69, CCRC 12094, CCRC:12094, DSM 40306, IFO 13063, ISP 5306, JCM 4497, NBRC 13063, NRRL B-3230, NRRL-ISP 5306, S. misionensis, Streptomyces misionesensis, VKM Ac-626
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