Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
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[Homology]
Score
SEC43754.1L,D-peptidoglycan transpeptidase YkuD, ErfK/YbiS/YcfS/YnhG family. (234 aa)    
Predicted Functional Partners:
SEC43714.1
Pyridoxamine 5'-phosphate oxidase.
       0.879
SED27325.1
Membrane carboxypeptidase (penicillin-binding protein).
     
  0.740
SED29482.1
D-alanyl-D-alanine carboxypeptidase / D-alanyl-D-alanine-endopeptidase (penicillin-binding protein 4).
    
  0.733
argH
Argininosuccinate lyase.
       0.694
SEC56820.1
Cell division protein FtsI/penicillin-binding protein 2.
     
  0.683
SED16690.1
Cell division protein FtsI/penicillin-binding protein 2.
     
  0.683
SED59299.1
Peptidoglycan glycosyltransferase.
     
  0.683
argG
Argininosuccinate synthase; Belongs to the argininosuccinate synthase family. Type 1 subfamily.
       0.606
SEC74581.1
Membrane carboxypeptidase (penicillin-binding protein).
     
  0.580
SEC92427.1
Membrane carboxypeptidase (penicillin-binding protein).
     
  0.580
Your Current Organism:
Streptomyces misionensis
NCBI taxonomy Id: 67331
Other names: ATCC 14991, ATCC 25475, BCRC 12094, CBS 885.69, CCRC 12094, CCRC:12094, DSM 40306, IFO 13063, ISP 5306, JCM 4497, NBRC 13063, NRRL B-3230, NRRL-ISP 5306, S. misionensis, Streptomyces misionesensis, VKM Ac-626
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