STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
SEC43754.1L,D-peptidoglycan transpeptidase YkuD, ErfK/YbiS/YcfS/YnhG family. (234 aa)    
Predicted Functional Partners:
SEC43714.1
Pyridoxamine 5'-phosphate oxidase.
       0.878
SED29482.1
D-alanyl-D-alanine carboxypeptidase / D-alanyl-D-alanine-endopeptidase (penicillin-binding protein 4).
    
  0.747
argH
Argininosuccinate lyase.
       0.726
argG
Argininosuccinate synthase; Belongs to the argininosuccinate synthase family. Type 1 subfamily.
       0.636
SEC08458.1
L,D-peptidoglycan transpeptidase YkuD, ErfK/YbiS/YcfS/YnhG family.
  
     0.569
SEC43499.1
Predicted oxidoreductase.
       0.476
SEC43956.1
Thiamine biosynthesis lipoprotein; Flavin transferase that catalyzes the transfer of the FMN moiety of FAD and its covalent binding to the hydroxyl group of a threonine residue in a target flavoprotein.
       0.440
SEC48143.1
ATP-dependent exoDNAse (exonuclease V), alpha subunit, helicase superfamily I.
  
     0.413
SEC90943.1
Peptidoglycan-binding (PGRP) domain of peptidoglycan hydrolases-containing protein.
  
     0.410
Your Current Organism:
Streptomyces misionensis
NCBI taxonomy Id: 67331
Other names: ATCC 14991, ATCC 25475, BCRC 12094, CBS 885.69, CCRC 12094, CCRC:12094, DSM 40306, IFO 13063, ISP 5306, JCM 4497, NBRC 13063, NRRL B-3230, NRRL-ISP 5306, S. misionensis, Streptomyces misionesensis, VKM Ac-626
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.