Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
SEC45642.1Hypothetical protein. (484 aa)    
Predicted Functional Partners:
SEC45602.1
Type VII secretion-associated serine protease mycosin.
 
     0.894
SED00081.1
Outer membrane protein assembly factor BamB, contains PQQ-like beta-propeller repeat.
  
     0.764
SED00116.1
PQQ-like domain-containing protein.
  
     0.755
SED14355.1
TerF vWA domain-containing protein.
  
     0.751
SED45924.1
Hypothetical protein.
  
     0.739
SED94988.1
Protein of unknown function.
  
     0.735
SEC45687.1
D-serine deaminase, pyridoxal phosphate-dependent.
       0.733
SEC45563.1
SseB protein N-terminal domain-containing protein.
 
     0.705
SEC71554.1
Hypothetical protein.
  
     0.699
SEC73609.1
Protein of unknown function.
  
     0.686
Your Current Organism:
Streptomyces misionensis
NCBI taxonomy Id: 67331
Other names: ATCC 14991, ATCC 25475, BCRC 12094, CBS 885.69, CCRC 12094, CCRC:12094, DSM 40306, IFO 13063, ISP 5306, JCM 4497, NBRC 13063, NRRL B-3230, NRRL-ISP 5306, S. misionensis, Streptomyces misionesensis, VKM Ac-626
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