Export your current network:
... as a vector graphic:
SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc
... as short tabular text output:
TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)
... as tabular text output:
TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)
... as an XML summary:
structured XML interaction data, according to the 'PSI-MI' data standard
... protein node degrees:
node degree of proteins in your network (given the current score cut-off)
... network coordinates:
a flat-file format describing the coordinates and colors of nodes in the network
... protein sequences:
MFA: multi-fasta format - containing the aminoacid sequences in the network
... protein annotations:
a tab-delimited file describing the names, domains and descriptions of proteins in your network
... functional annotations:
a tab-delimited file containing all known functional terms of protiens in your network
Browse interactions in tabular form:
| node1 | node2 | node1 accession | node2 accession | node1 annotation | node2 annotation | score |
| SEC47127.1 | SEC47211.1 | SAMN04490357_2082 | SAMN04490357_2084 | Recombination endonuclease VII. | Proteasome accessory factor A. | 0.732 |
| SEC47127.1 | arc | SAMN04490357_2082 | SAMN04490357_2085 | Recombination endonuclease VII. | Proteasome-associated ATPase; ATPase which is responsible for recognizing, binding, unfolding and translocation of pupylated proteins into the bacterial 20S proteasome core particle. May be essential for opening the gate of the 20S proteasome via an interaction with its C-terminus, thereby allowing substrate entry and access to the site of proteolysis. Thus, the C-termini of the proteasomal ATPase may function like a 'key in a lock' to induce gate opening and therefore regulate proteolysis. | 0.674 |
| SEC47127.1 | prcA | SAMN04490357_2082 | SAMN04490357_2080 | Recombination endonuclease VII. | Proteasome alpha subunit; Component of the proteasome core, a large protease complex with broad specificity involved in protein degradation. Belongs to the peptidase T1A family. | 0.801 |
| SEC47127.1 | prcB | SAMN04490357_2082 | SAMN04490357_2081 | Recombination endonuclease VII. | Proteasome endopeptidase complex, beta component Threonine peptidase. MEROPS family T01B; Component of the proteasome core, a large protease complex with broad specificity involved in protein degradation. Belongs to the peptidase T1B family. | 0.859 |
| SEC47127.1 | pup | SAMN04490357_2082 | SAMN04490357_2083 | Recombination endonuclease VII. | Prokaryotic ubiquitin-like protein Pup; Protein modifier that is covalently attached to lysine residues of substrate proteins, thereby targeting them for proteasomal degradation. The tagging system is termed pupylation. Belongs to the prokaryotic ubiquitin-like protein family. | 0.825 |
| SEC47211.1 | SEC47127.1 | SAMN04490357_2084 | SAMN04490357_2082 | Proteasome accessory factor A. | Recombination endonuclease VII. | 0.732 |
| SEC47211.1 | SEC47292.1 | SAMN04490357_2084 | SAMN04490357_2086 | Proteasome accessory factor A. | Ferredoxin. | 0.659 |
| SEC47211.1 | SED15602.1 | SAMN04490357_2084 | SAMN04490357_3976 | Proteasome accessory factor A. | Protein of unknown function. | 0.701 |
| SEC47211.1 | arc | SAMN04490357_2084 | SAMN04490357_2085 | Proteasome accessory factor A. | Proteasome-associated ATPase; ATPase which is responsible for recognizing, binding, unfolding and translocation of pupylated proteins into the bacterial 20S proteasome core particle. May be essential for opening the gate of the 20S proteasome via an interaction with its C-terminus, thereby allowing substrate entry and access to the site of proteolysis. Thus, the C-termini of the proteasomal ATPase may function like a 'key in a lock' to induce gate opening and therefore regulate proteolysis. | 0.964 |
| SEC47211.1 | pafA | SAMN04490357_2084 | SAMN04490357_2077 | Proteasome accessory factor A. | Proteasome accessory factor A; Catalyzes the covalent attachment of the prokaryotic ubiquitin-like protein modifier Pup to the proteasomal substrate proteins, thereby targeting them for proteasomal degradation. This tagging system is termed pupylation. The ligation reaction involves the side-chain carboxylate of the C-terminal glutamate of Pup and the side- chain amino group of a substrate lysine. | 0.806 |
| SEC47211.1 | prcA | SAMN04490357_2084 | SAMN04490357_2080 | Proteasome accessory factor A. | Proteasome alpha subunit; Component of the proteasome core, a large protease complex with broad specificity involved in protein degradation. Belongs to the peptidase T1A family. | 0.955 |
| SEC47211.1 | prcB | SAMN04490357_2084 | SAMN04490357_2081 | Proteasome accessory factor A. | Proteasome endopeptidase complex, beta component Threonine peptidase. MEROPS family T01B; Component of the proteasome core, a large protease complex with broad specificity involved in protein degradation. Belongs to the peptidase T1B family. | 0.952 |
| SEC47211.1 | prcB-2 | SAMN04490357_2084 | SAMN04490357_7153 | Proteasome accessory factor A. | Proteasome endopeptidase complex, beta component Threonine peptidase. MEROPS family T01B; Component of the proteasome core, a large protease complex with broad specificity involved in protein degradation. Belongs to the peptidase T1B family. | 0.855 |
| SEC47211.1 | pup | SAMN04490357_2084 | SAMN04490357_2083 | Proteasome accessory factor A. | Prokaryotic ubiquitin-like protein Pup; Protein modifier that is covalently attached to lysine residues of substrate proteins, thereby targeting them for proteasomal degradation. The tagging system is termed pupylation. Belongs to the prokaryotic ubiquitin-like protein family. | 0.963 |
| SEC47292.1 | SEC47211.1 | SAMN04490357_2086 | SAMN04490357_2084 | Ferredoxin. | Proteasome accessory factor A. | 0.659 |
| SEC47292.1 | arc | SAMN04490357_2086 | SAMN04490357_2085 | Ferredoxin. | Proteasome-associated ATPase; ATPase which is responsible for recognizing, binding, unfolding and translocation of pupylated proteins into the bacterial 20S proteasome core particle. May be essential for opening the gate of the 20S proteasome via an interaction with its C-terminus, thereby allowing substrate entry and access to the site of proteolysis. Thus, the C-termini of the proteasomal ATPase may function like a 'key in a lock' to induce gate opening and therefore regulate proteolysis. | 0.641 |
| SEC47292.1 | prcA | SAMN04490357_2086 | SAMN04490357_2080 | Ferredoxin. | Proteasome alpha subunit; Component of the proteasome core, a large protease complex with broad specificity involved in protein degradation. Belongs to the peptidase T1A family. | 0.640 |
| SEC47292.1 | prcB | SAMN04490357_2086 | SAMN04490357_2081 | Ferredoxin. | Proteasome endopeptidase complex, beta component Threonine peptidase. MEROPS family T01B; Component of the proteasome core, a large protease complex with broad specificity involved in protein degradation. Belongs to the peptidase T1B family. | 0.642 |
| SEC47292.1 | pup | SAMN04490357_2086 | SAMN04490357_2083 | Ferredoxin. | Prokaryotic ubiquitin-like protein Pup; Protein modifier that is covalently attached to lysine residues of substrate proteins, thereby targeting them for proteasomal degradation. The tagging system is termed pupylation. Belongs to the prokaryotic ubiquitin-like protein family. | 0.685 |
| SEC65992.1 | pup | SAMN04490357_2558 | SAMN04490357_2083 | Polyketide cyclase / dehydrase and lipid transport. | Prokaryotic ubiquitin-like protein Pup; Protein modifier that is covalently attached to lysine residues of substrate proteins, thereby targeting them for proteasomal degradation. The tagging system is termed pupylation. Belongs to the prokaryotic ubiquitin-like protein family. | 0.615 |
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