STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
SEC78174.1Coenzyme PQQ synthesis protein D (PqqD). (338 aa)    
Predicted Functional Partners:
SEC77983.1
ABC-2 type transport system permease protein.
       0.741
SEC78023.1
ABC-type multidrug transport system, permease component.
       0.741
SEC78058.1
ABC-2 type transport system ATP-binding protein.
       0.741
SEC78096.1
Predicted Zn-dependent protease or its inactivated homolog.
       0.741
SEC78130.1
Microcin-processing peptidase 2. Unknown type peptidase. MEROPS family U62.
       0.741
SEC77944.1
N-acetylglucosamine-6-phosphate deacetylase.
       0.593
SEC77642.1
CYTH domain-containing protein.
       0.491
SEC77679.1
Haloacid dehalogenase superfamily, subfamily IA, variant 3 with third motif having DD or ED.
       0.491
SEC77715.1
Hypothetical protein.
       0.491
SEC77756.1
MOSC domain-containing protein YiiM.
       0.491
Your Current Organism:
Streptomyces misionensis
NCBI taxonomy Id: 67331
Other names: ATCC 14991, ATCC 25475, BCRC 12094, CBS 885.69, CCRC 12094, CCRC:12094, DSM 40306, IFO 13063, ISP 5306, JCM 4497, NBRC 13063, NRRL B-3230, NRRL-ISP 5306, S. misionensis, Streptomyces misionesensis, VKM Ac-626
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