STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
SEC99826.1DNA-binding response regulator, NarL/FixJ family, contains REC and HTH domains. (255 aa)    
Predicted Functional Partners:
SED73752.1
Signal transduction histidine kinase.
  
 0.983
SEC53648.1
Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase.
 
  0.893
SED49890.1
Signal transduction histidine kinase.
  
  0.861
SEC67135.1
Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase.
  
  0.858
SED76346.1
Signal transduction histidine kinase.
  
  0.858
SED64691.1
Signal transduction histidine kinase.
  
  0.857
SED30058.1
Signal transduction histidine kinase.
  
  0.850
SEB95060.1
Signal transduction histidine kinase.
  
  0.842
SED11075.1
Signal transduction histidine kinase.
  
  0.842
SED11007.1
Signal transduction histidine kinase.
  
  0.831
Your Current Organism:
Streptomyces misionensis
NCBI taxonomy Id: 67331
Other names: ATCC 14991, ATCC 25475, BCRC 12094, CBS 885.69, CCRC 12094, CCRC:12094, DSM 40306, IFO 13063, ISP 5306, JCM 4497, NBRC 13063, NRRL B-3230, NRRL-ISP 5306, S. misionensis, Streptomyces misionesensis, VKM Ac-626
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